Global host molecular perturbations upon in situ loss of bacterial endosymbionts in the deep-sea mussel Bathymodiolus azoricus assessed using proteomics and transcriptomics

The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures

(2018) Anderson B. Mayfield et al.   PLoS One

Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

(2016) Ruby Ponnudurai et al.   ISME Journal

Dual-compartmental transcriptomic + proteomic analysis of a marine endosymbiosis exposed to environmental change

(2016) Anderson B. Mayfield et al.   MOLECULAR ECOLOGY

Multiple I-Type Lysozymes in the Hydrothermal Vent Mussel Bathymodiolus azoricus and Their Role in Symbiotic Plasticity

(2016) Camille Detree et al.   PLoS One

Post-capture immune gene expression studies in the deep-sea hydrothermal vent mussel Bathymodiolus azoricus acclimatized to atmospheric pressure

(2015) Inês Barros et al.   FISH & SHELLFISH IMMUNOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels

(2015) Lizbeth Sayavedra et al.   eLife

Transcriptome analyses to investigate symbiotic relationships between marine protists

(2015) Sergio Balzano et al.   Frontiers in Microbiology

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Innate immune recognition of the microbiota promotes host-microbial symbiosis

(2013) Hiutung Chu et al.   NATURE IMMUNOLOGY

Subseafloor phase equilibria in high-temperature hydrothermal fluids of the Lucky Strike Seamount (Mid-Atlantic Ridge, 37°17′N)

(2012) Nicholas J. Pester et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses

(2012) Spencer V. Nyholm et al.   NATURE REVIEWS MICROBIOLOGY

Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels

(2011) Isabelle Boutet et al.   BMC GENOMICS

Symbiosis specificity in the legume - rhizobial mutualism

(2011) Dong Wang et al.   CELLULAR MICROBIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Why bacteria matter in animal development and evolution

(2010) Sebastian Fraune et al.   BIOESSAYS

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

(2010) Raul Bettencourt et al.   BMC GENOMICS

Mixotrophy in the deep sea: a dual endosymbiotic hydrothermal mytilid assimilates dissolved and particulate organic matter

(2010) V Riou et al.   MARINE ECOLOGY PROGRESS SERIES

The consequences of sample pooling in proteomics: An empirical study

(2009) Angel P. Diz et al.   ELECTROPHORESIS

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY

An insect symbiosis is influenced by bacterium-specific polymorphisms in outer-membrane protein A

(2008) B. L. Weiss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution

(2007) Arnaud Tanguy et al.   GENE