refineD: improved protein structure refinement using machine learning based restrained relaxation
出版年份 2019 全文链接
标题
refineD: improved protein structure refinement using machine learning based restrained relaxation
作者
关键词
-
出版物
BIOINFORMATICS
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-02-14
DOI
10.1093/bioinformatics/btz101
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
- (2017) Rebecca F. Alford et al. Journal of Chemical Theory and Computation
- Assessment of the model refinement category in CASP12
- (2017) Ladislav Hovan et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Critical assessment of methods of protein structure prediction (CASP)-Round XII
- (2017) John Moult et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- What makes it difficult to refine protein models further via molecular dynamics simulations?
- (2017) Lim Heo et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Evaluation of the template-based modeling in CASP12
- (2017) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Computational protein structure refinement: almost there, yet still so far to go
- (2017) Michael Feig Wiley Interdisciplinary Reviews-Computational Molecular Science
- 3Drefine: an interactive web server for efficient protein structure refinement
- (2016) Debswapna Bhattacharya et al. NUCLEIC ACIDS RESEARCH
- Assessment of refinement of template-based models in CASP11
- (2016) Vivek Modi et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Protein Secondary Structure Prediction Using Deep Convolutional Neural Fields
- (2016) Sheng Wang et al. Scientific Reports
- 3DRobot: automated generation of diverse and well-packed protein structure decoys
- (2015) Haiyou Deng et al. BIOINFORMATICS
- Coupling an Ensemble of Homologues Improves Refinement of Protein Homology Models
- (2015) André Wildberg et al. Journal of Chemical Theory and Computation
- Protein structure refinement with adaptively restrained homologous replicas
- (2015) Dennis Della Corte et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- CASP11 refinement experiments with ROSETTA
- (2015) Hahnbeom Park et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Protein structure refinement via molecular-dynamics simulations: What works and what does not?
- (2015) Michael Feig et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Effective protein model structure refinement by loop modeling and overall relaxation
- (2015) Gyu Rie Lee et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning
- (2015) Rhys Heffernan et al. Scientific Reports
- i3Drefine Software for Protein 3D Structure Refinement and Its Assessment in CASP10
- (2013) Debswapna Bhattacharya et al. PLoS One
- 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization
- (2013) Debswapna Bhattacharya et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Physics-based protein structure refinement through multiple molecular dynamics trajectories and structure averaging
- (2013) Vahid Mirjalili et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Evaluation of predictions in the CASP10 model refinement category
- (2013) Timothy Nugent et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Structure Refinement of Protein Low Resolution Models Using the GNEIMO Constrained Dynamics Method
- (2012) In-Hee Park et al. JOURNAL OF PHYSICAL CHEMISTRY B
- KoBaMIN: a knowledge-based minimization web server for protein structure refinement
- (2012) J. P. G. L. M. Rodrigues et al. NUCLEIC ACIDS RESEARCH
- Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization
- (2011) Dong Xu et al. BIOPHYSICAL JOURNAL
- Algorithm discovery by protein folding game players
- (2011) F. Khatib et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling
- (2011) Jian Zhang et al. STRUCTURE
- PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta
- (2010) S. Chaudhury et al. BIOINFORMATICS
- Reliable protein structure refinement using a physical energy function
- (2010) Matthew S. Lin et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Alternate States of Proteins Revealed by Detailed Energy Landscape Mapping
- (2010) Michael D. Tyka et al. JOURNAL OF MOLECULAR BIOLOGY
- I-TASSER: a unified platform for automated protein structure and function prediction
- (2010) Ambrish Roy et al. Nature Protocols
- Homology modeling in drug discovery: current trends and applications
- (2009) Claudio N. Cavasotto et al. DRUG DISCOVERY TODAY
- I-TASSER server for protein 3D structure prediction
- (2008) Yang Zhang BMC BIOINFORMATICS
- Refinement of comparative models of protein structure by using multicanonical molecular dynamics simulations
- (2008) Ryuichiro Ishitani et al. MOLECULAR SIMULATION
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