Blood transcriptomic comparison of individuals with and without autism spectrum disorder: A combined-samples mega-analysis

A common molecular signature in ASD gene expression: following Root 66 to autism

(2016) L Diaz-Beltran et al.   Translational Psychiatry

Maternal Lipopolysaccharide Exposure Promotes Immunological Functional Changes in Adult Offspring CD4+T Cells

(2015) Rong Luan et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Meta-Analysis of Gene Expression in Autism Spectrum Disorder

(2015) Carolyn Ch'ng et al.   Autism Research

Interferon-gamma inhibits the neuronal differentiation of neural progenitor cells by inhibiting the expression of Neurogenin2 via the JAK/STAT1 pathway

(2015) Jyhyun Ahn et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Variation in the Human Immune System Is Largely Driven by Non-Heritable Influences

(2015) Petter Brodin et al.   CELL

Meta-analysis of differentially expressed genes in autism based on gene expression data

(2015) L.F. Ning et al.   GENETICS AND MOLECULAR RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Decreased mTOR signaling pathway in human idiopathic autism and in rats exposed to valproic acid

(2015) Chiara Nicolini et al.   Acta Neuropathologica Communications

Behavioral Profile in RASopathies

(2014) Paolo Alfieri et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

NF1 regulation of RAS/ERK signaling is required for appropriate granule neuron progenitor expansion and migration in cerebellar development

(2014) Efrain Sanchez-Ortiz et al.   GENES & DEVELOPMENT

The Familial Risk of Autism

(2014) Sven Sandin et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Cytokine aberrations in autism spectrum disorder: a systematic review and meta-analysis

(2014) A Masi et al.   MOLECULAR PSYCHIATRY

Synaptic, transcriptional and chromatin genes disrupted in autism

(2014) Silvia De Rubeis et al.   NATURE

Most genetic risk for autism resides with common variation

(2014) Trent Gaugler et al.   NATURE GENETICS

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism

(2014) Simone Gupta et al.   Nature Communications

The Role of Environmental Factors in Modulating Immune Responses in Early Life

(2014) Duncan M. MacGillivray et al.   Frontiers in Immunology

CellMix: a comprehensive toolbox for gene expression deconvolution

(2013) R. Gaujoux et al.   BIOINFORMATICS

mRMRe: an R package for parallelized mRMR ensemble feature selection

(2013) Nicolas De Jay et al.   BIOINFORMATICS

Pathway-based outlier method reveals heterogeneous genomic structure of autism in blood transcriptome

(2013) Malcolm G Campbell et al.   BMC Medical Genomics

Systematic review of genome-wide gene expression studies of bipolar disorder

(2013) Fayaz Seifuddin et al.   BMC Psychiatry

Malaria Modifies Neonatal and Early-Life Toll-Like Receptor Cytokine Responses

(2013) Komi Gbédandé et al.   INFECTION AND IMMUNITY

Endogenous Interferon   Directly Regulates Neural Precursors in the Non-Inflammatory Brain

(2013) L. Li et al.   JOURNAL OF NEUROSCIENCE

Peripheral blood gene expression signature differentiates children with autism from unaffected siblings

(2013) S. W. Kong et al.   NEUROGENETICS

Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods

(2013) Leif Väremo et al.   NUCLEIC ACIDS RESEARCH

Fast Association Tests for Genes with FAST

(2013) Pritam Chanda et al.   PLoS One

Wnts in adult brain: from synaptic plasticity to cognitive deficiencies

(2013) Carolina A. Oliva et al.   Frontiers in Cellular Neuroscience

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

Comparison of co-expression measures: mutual information, correlation, and model based indices

(2012) Lin Song et al.   BMC BIOINFORMATICS

Maternal immune activation causes age- and region-specific changes in brain cytokines in offspring throughout development

(2012) Paula A. Garay et al.   BRAIN BEHAVIOR AND IMMUNITY

Up-regulation of Ras/Raf/ERK1/2 signaling impairs cultured neuronal cell migration, neurogenesis, synapse formation, and dendritic spine development

(2012) Kun Yang et al.   Brain Structure & Function

Paradoxical downregulation of HLA-A expression by IFNγ associated with schizophrenia and noncoding genes

(2012) Songhai Gu et al.   IMMUNOBIOLOGY

Recent advances in understanding viral evasion of type I interferon

(2012) Kathryne E. Taylor et al.   IMMUNOLOGY

Decreased MHC I expression in IFN gamma mutant mice alters synaptic elimination in the spinal cord after peripheral injury

(2012) Sheila CS Victório et al.   Journal of Neuroinflammation

Blood-Based Gene Expression Signatures of Infants and Toddlers With Autism

(2012) Stephen J. Glatt et al.   JOURNAL OF THE AMERICAN ACADEMY OF CHILD AND ADOLESCENT PSYCHIATRY

MHC class I protein is expressed by neurons and neural progenitors in mid-gestation mouse brain

(2012) Marcelo A. Chacon et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Genome-wide expression profiling of schizophrenia using a large combined cohort

(2012) M Mistry et al.   MOLECULAR PSYCHIATRY

Autism-related deficits via dysregulated eIF4E-dependent translational control

(2012) Christos G. Gkogkas et al.   NATURE

De novo mutations revealed by whole-exome sequencing are strongly associated with autism

(2012) Stephan J. Sanders et al.   NATURE

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

(2012) Oliver Stegle et al.   Nature Protocols

Brain Transcriptional and Epigenetic Associations with Autism

(2012) Matthew R. Ginsberg et al.   PLoS One

Characteristics and Predictive Value of Blood Transcriptome Signature in Males with Autism Spectrum Disorders

(2012) Sek Won Kong et al.   PLoS One

Modeling an autism risk factor in mice leads to permanent immune dysregulation

(2012) E. Y. Hsiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Age-Dependent Brain Gene Expression and Copy Number Anomalies in Autism Suggest Distinct Pathological Processes at Young Versus Mature Ages

(2012) Maggie L. Chow et al.   PLoS Genetics

A review of the evidence for the canonical Wnt pathway in autism spectrum disorders

(2012) Hans Kalkman   Molecular Autism

pathClass: an R-package for integration of pathway knowledge into support vector machines for biomarker discovery

(2011) M. Johannes et al.   BIOINFORMATICS

Wnt signaling during synaptic development and plasticity

(2011) Vivian Budnik et al.   CURRENT OPINION IN NEUROBIOLOGY

Transcriptomic analysis of autistic brain reveals convergent molecular pathology

(2011) Irina Voineagu et al.   NATURE

Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders

(2011) Dan Levy et al.   NEURON

Multiple Recurrent De Novo CNVs, Including Duplications of the 7q11.23 Williams Syndrome Region, Are Strongly Associated with Autism

(2011) Stephan J. Sanders et al.   NEURON

Autism and Increased Paternal Age Related Changes in Global Levels of Gene Expression Regulation

(2011) Mark D. Alter et al.   PLoS One

Expression Profiling of Autism Candidate Genes during Human Brain Development Implicates Central Immune Signaling Pathways

(2011) Mark N. Ziats et al.   PLoS One

Autism-Associated Gene Expression in Peripheral Leucocytes Commonly Observed between Subjects with Autism and Healthy Women Having Autistic Children

(2011) Yuki Kuwano et al.   PLoS One

mTOR: A pathogenic signaling pathway in developmental brain malformations

(2011) Peter B. Crino   TRENDS IN MOLECULAR MEDICINE

Is My Network Module Preserved and Reproducible?

(2011) Peter Langfelder et al.   PLoS Computational Biology

Gene-Based Tests of Association

(2011) Hailiang Huang et al.   PLoS Genetics

A framework for oligonucleotide microarray preprocessing

(2010) Benilton S. Carvalho et al.   BIOINFORMATICS

Maternal warmth buffers the effects of low early-life socioeconomic status on pro-inflammatory signaling in adulthood

(2010) E Chen et al.   MOLECULAR PSYCHIATRY

Ras and Rap Signaling in Synaptic Plasticity and Mental Disorders

(2010) Ruth L. Stornetta et al.   NEUROSCIENTIST

Environmental toxicants and the developing immune system: A missing link in the global battle against infectious disease?

(2010) Bethany Winans et al.   REPRODUCTIVE TOXICOLOGY

penalizedSVM: a R-package for feature selection SVM classification

(2009) Natalia Becker et al.   BIOINFORMATICS

A HaemAtlas: characterizing gene expression in differentiated human blood cells

(2009) Nicholas A. Watkins et al.   BLOOD

Elevated immune response in the brain of autistic patients

(2009) Xiaohong Li et al.   JOURNAL OF NEUROIMMUNOLOGY

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

MHC Class I: An Unexpected Role in Neuronal Plasticity

(2009) Carla J. Shatz   NEURON

Correlations of Gene Expression with Blood Lead Levels in Children with Autism Compared to Typically Developing Controls

(2009) Yingfang Tian et al.   NEUROTOXICITY RESEARCH

Correlations Between Gene Expression and Mercury Levels in Blood of Boys With and Without Autism

(2009) Boryana Stamova et al.   NEUROTOXICITY RESEARCH

mTOR signaling: At the crossroads of plasticity, memory and disease

(2009) Charles A. Hoeffer et al.   TRENDS IN NEUROSCIENCES

Altered gene expression and function of peripheral blood natural killer cells in children with autism

(2008) Amanda M. Enstrom et al.   BRAIN BEHAVIOR AND IMMUNITY

The Autistic Neuron: Troubled Translation?

(2008) Raymond J. Kelleher et al.   CELL

Autism: Many Genes, Common Pathways?

(2008) Daniel H. Geschwind   CELL

A map of human protein interactions derived from co-expression of human mRNAs and their orthologs

(2008) Arun K Ramani et al.   Molecular Systems Biology

Immune transcriptome alterations in the temporal cortex of subjects with autism

(2008) Krassimira Garbett et al.   NEUROBIOLOGY OF DISEASE

Gene expression changes in children with autism

(2007) Jeffrey P. Gregg et al.   GENOMICS