Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data
出版年份 2015 全文链接
标题
Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data
作者
关键词
-
出版物
BIOINFORMATICS
Volume 31, Issue 21, Pages 3421-3428
出版商
Oxford University Press (OUP)
发表日期
2015-07-16
DOI
10.1093/bioinformatics/btv415
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Blue: correcting sequencing errors using consensus and context
- (2014) Paul Greenfield et al. BIOINFORMATICS
- Trowel: a fast and accurate error correction module for Illumina sequencing reads
- (2014) Eun-Cheon Lim et al. BIOINFORMATICS
- Fiona: a parallel and automatic strategy for read error correction
- (2014) Marcel H. Schulz et al. BIOINFORMATICS
- BLESS: Bloom filter-based error correction solution for high-throughput sequencing reads
- (2014) Yun Heo et al. BIOINFORMATICS
- LoRDEC: accurate and efficient long read error correction
- (2014) Leena Salmela et al. BIOINFORMATICS
- proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
- (2014) Thomas Hackl et al. BIOINFORMATICS
- HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data
- (2014) Adrianto Wirawan et al. BMC BIOINFORMATICS
- RACER: Rapid and accurate correction of errors in reads
- (2013) Lucian Ilie et al. BIOINFORMATICS
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- BayesHammer: Bayesian clustering for error correction in single-cell sequencing
- (2013) Sergey I Nikolenko et al. BMC GENOMICS
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Probabilistic error correction for RNA sequencing
- (2013) Hai-Son Le et al. NUCLEIC ACIDS RESEARCH
- Comparing Memory-Efficient Genome Assemblers on Stand-Alone and Cloud Infrastructures
- (2013) Dimitrios Kleftogiannis et al. PLoS One
- Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
- (2012) Yongchao Liu et al. BIOINFORMATICS
- A survey of error-correction methods for next-generation sequencing
- (2012) X. Yang et al. BRIEFINGS IN BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Improving PacBio Long Read Accuracy by Short Read Alignment
- (2012) Kin Fai Au et al. PLoS One
- Correcting errors in short reads by multiple alignments
- (2011) L. Salmela et al. BIOINFORMATICS
- Error correction of high-throughput sequencing datasets with non-uniform coverage
- (2011) P. Medvedev et al. BIOINFORMATICS
- Repeat-aware modeling and correction of short read errors
- (2011) Xiao Yang et al. BMC BIOINFORMATICS
- Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data
- (2011) F. Finotello et al. BRIEFINGS IN BIOINFORMATICS
- ECHO: A reference-free short-read error correction algorithm
- (2011) W.-C. Kao et al. GENOME RESEARCH
- Efficient de novo assembly of large genomes using compressed data structures
- (2011) J. T. Simpson et al. GENOME RESEARCH
- GAGE: A critical evaluation of genome assemblies and assembly algorithms
- (2011) S. L. Salzberg et al. GENOME RESEARCH
- HiTEC: accurate error correction in high-throughput sequencing data
- (2010) L. Ilie et al. BIOINFORMATICS
- Correction of sequencing errors in a mixed set of reads
- (2010) L. Salmela BIOINFORMATICS
- Reptile: representative tiling for short read error correction
- (2010) X. Yang et al. BIOINFORMATICS
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phenotypic connections in surprising places
- (2010) Bolan Linghu et al. GENOME BIOLOGY
- SHREC: a short-read error correction method
- (2009) J. Schroder et al. BIOINFORMATICS
- Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing
- (2009) W. Qu et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Aggressive assembly of pyrosequencing reads with mates
- (2008) Jason R. Miller et al. BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started