Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networks

Logical transformation of genome-scale metabolic models for gene level applications and analysis

(2015) Cheng Zhang et al.   BIOINFORMATICS

Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation

(2014) Hassan B. Hartman et al.   MICROBIOLOGY-SGM

An exact arithmetic toolbox for a consistent and reproducible structural analysis of metabolic network models

(2014) Leonid Chindelevitch et al.   Nature Communications

Essential Plasticity and Redundancy of Metabolism Unveiled by Synthetic Lethality Analysis

(2014) Oriol Güell et al.   PLoS Computational Biology

Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks

(2014) Axel von Kamp et al.   PLoS Computational Biology

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling

(2013) J. A. H. Wodke et al.   Molecular Systems Biology

Perceptions and Experiences of Research Participants on Gender-Based Violence Community Based Survey: Implications for Ethical Guidelines

(2012) Yandisa Sikweyiya et al.   PLoS One

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

(2011) Ines Thiele et al.   BMC Systems Biology

Applications of system-level models of metabolism for analysis of bacterial physiology and identification of new drug targets

(2011) A. Navid   Briefings in Functional Genomics

Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery

(2011) H. U. Kim et al.   Molecular Systems Biology

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Development and analysis of an in vivo-compatible metabolic network of Mycobacterium tuberculosis

(2010) Xin Fang et al.   BMC Systems Biology

Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network

(2010) Germán Plata et al.   Molecular Systems Biology

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

(2009) Anu Raghunathan et al.   BMC Systems Biology

Comparative Genome-Scale Metabolic Reconstruction and Flux Balance Analysis of Multiple Staphylococcus aureus Genomes Identify Novel Antimicrobial Drug Targets

(2009) D.-S. Lee et al.   JOURNAL OF BACTERIOLOGY

Genome-scale gene/reaction essentiality and synthetic lethality analysis

(2009) Patrick F Suthers et al.   Molecular Systems Biology

Modes and cuts in metabolic networks: Complexity and algorithms

(2008) Vicente Acuña et al.   BIOSYSTEMS

Structural robustness of metabolic networks with respect to multiple knockouts

(2007) Jörn Behre et al.   JOURNAL OF THEORETICAL BIOLOGY