SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data: Table 1.

Within-host nucleotide diversity of virus populations: Insights from next-generation sequencing

(2015) Chase W. Nelson et al.   INFECTION GENETICS AND EVOLUTION

Population-Genetic Inference from Pooled-Sequencing Data

(2014) Michael Lynch et al.   Genome Biology and Evolution

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses

(2013) Peter R. Wilker et al.   Nature Communications

SNP calling by sequencing pooled samples

(2012) Emanuele Raineri et al.   BMC BIOINFORMATICS

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

To Pool, or Not to Pool?

(2010) David J. Cutler et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

PolyAna: analyzing synonymous and nonsynonymous polymorphic sites

(2010) Ethan W. Knapp et al.   Conservation Genetics Resources