Learning chromatin states with factorized information criteria

Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

(2014) Marcin Cieślik et al.   BMC GENOMICS

An integrative approach to understanding the combinatorial histone code at functional elements

(2013) William K. M. Lai et al.   BIOINFORMATICS

A double take on bivalent promoters

(2013) P. Voigt et al.   GENES & DEVELOPMENT

Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

(2013) J. Ernst et al.   GENOME RESEARCH

Combinatorial complexity in chromatin structure and function: revisiting the histone code

(2012) Oliver J Rando   CURRENT OPINION IN GENETICS & DEVELOPMENT

ChromHMM: automating chromatin-state discovery and characterization

(2012) Jason Ernst et al.   NATURE METHODS

Integrative annotation of chromatin elements from ENCODE data

(2012) Michael M. Hoffman et al.   NUCLEIC ACIDS RESEARCH

KAP1 Protein: An Enigmatic Master Regulator of the Genome

(2011) Sushma Iyengar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

Making sense of chromatin states

(2011) Monya Baker   NATURE METHODS

Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model

(2010) Jessica L Larson et al.   BMC BIOINFORMATICS

Discovery and characterization of chromatin states for systematic annotation of the human genome

(2010) Jason Ernst et al.   NATURE BIOTECHNOLOGY

Charting histone modifications and the functional organization of mammalian genomes

(2010) Vicky W. Zhou et al.   NATURE REVIEWS GENETICS

Combinatorial patterns of histone acetylations and methylations in the human genome

(2008) Zhibin Wang et al.   NATURE GENETICS