Phylogenetic evidence for cladogenetic polyploidization in land plants

How diploidization turned a tetraploid into a pseudotriploid

(2016) Terezie Mandáková et al.   AMERICAN JOURNAL OF BOTANY

Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms

(2015) Niv Sabath et al.   NEW PHYTOLOGIST

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

(2015) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

Polyploid Formation Shapes Flowering Plant Diversity

(2014) Samuel V. Scarpino et al.   AMERICAN NATURALIST

Comparative analysis reveals that polyploidy does not decelerate diversification in fish

(2014) S. H. Zhan et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

ChromEvol: Assessing the Pattern of Chromosome Number Evolution and the Inference of Polyploidy along a Phylogeny

(2014) Lior Glick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltiset al. (2014)

(2014) Itay Mayrose et al.   NEW PHYTOLOGIST

Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayroseet al. (2011)

(2014) Douglas E. Soltis et al.   NEW PHYTOLOGIST

The Chromosome Counts Database (CCDB) - a community resource of plant chromosome numbers

(2014) Anna Rice et al.   NEW PHYTOLOGIST

FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS

(2013) Jeremy M. Beaulieu et al.   EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Linking the Investigations of Character Evolution and Species Diversification

(2012) Karen Magnuson-Ford et al.   AMERICAN NATURALIST

TEMPO AND MODE IN PLANT BREEDING SYSTEM EVOLUTION

(2012) Emma E. Goldberg et al.   EVOLUTION

Accelerated speciation in colour-polymorphic birds

(2012) Andrew F. Hugall et al.   NATURE

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The long wait for hybrid sterility in flowering plants

(2012) Donald A. Levin   NEW PHYTOLOGIST

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Recently Formed Polyploid Plants Diversify at Lower Rates

(2011) I. Mayrose et al.   SCIENCE

An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty

(2010) O. Penn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Species Selection Maintains Self-Incompatibility

(2010) E. E. Goldberg et al.   SCIENCE

Introgression of fitness genes across a ploidy barrier

(2009) Mark A. Chapman et al.   NEW PHYTOLOGIST

The frequency of polyploid speciation in vascular plants

(2009) T. E. Wood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

Probabilistic Models of Chromosome Number Evolution and the Inference of Polyploidy

(2009) Itay Mayrose et al.   SYSTEMATIC BIOLOGY

Polyploid Speciation Did Not Confer Instant Reproductive Isolation in Capsella (Brassicaceae)

(2008) T. Slotte et al.   MOLECULAR BIOLOGY AND EVOLUTION