Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment

Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight

(2018) Qian Liu et al.   ISME Journal

Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system

(2017) Laura A Sauder et al.   ISME Journal

Cyanate distribution and uptake in North Atlantic coastal waters

(2017) Brittany Widner et al.   LIMNOLOGY AND OCEANOGRAPHY

Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation

(2017) Alyson E. Santoro et al.   LIMNOLOGY AND OCEANOGRAPHY

Cyanate distribution and uptake above and within the Eastern Tropical South Pacific oxygen deficient zone

(2017) Brittany Widner et al.   LIMNOLOGY AND OCEANOGRAPHY

Oxidation of urea-derived nitrogen by thaumarchaeota-dominated marine nitrifying communities

(2016) Bradley B. Tolar et al.   ENVIRONMENTAL MICROBIOLOGY

NC10 bacteria in marine oxygen minimum zones

(2016) Cory C Padilla et al.   ISME Journal

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Distribution, Sources, and Sinks of Cyanate in the Coastal North Atlantic Ocean

(2016) Brittany Widner et al.   Environmental Science & Technology Letters

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle

(2016) Clara Martínez-Pérez et al.   Nature Microbiology

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

(2015) Barbara Bayer et al.   ISME Journal

Biogeochemical and metagenomic analysis of nitrite accumulation in the Gulf of Mexico hypoxic zone

(2015) Laura A. Bristow et al.   LIMNOLOGY AND OCEANOGRAPHY

Cyanate as an energy source for nitrifiers

(2015) Marton Palatinszky et al.   NATURE

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genusNitrospira

(2015) Hanna Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Standard filtration practices may significantly distort planktonic microbial diversity estimates

(2015) Cory C. Padilla et al.   Frontiers in Microbiology

Chemoautotrophic growth of ammonia-oxidizing Thaumarchaeota enriched from a pelagic redox gradient in the Baltic Sea

(2015) Carlo Berg et al.   Frontiers in Microbiology

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Urea Uptake and Carbon Fixation by Marine Pelagic Bacteria and Archaea during the Arctic Summer and Winter Seasons

(2014) Tara L. Connelly et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The effect of nutrients on carbon and nitrogen fixation by the UCYN-A–haptophyte symbiosis

(2014) Andreas Krupke et al.   ISME Journal

Revisiting N2 fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach

(2014) Dagmar Woebken et al.   ISME Journal

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation

(2014) W. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatographic Determination of Nanomolar Cyanate Concentrations in Estuarine and Sea Waters by Precolumn Fluorescence Derivatization

(2013) Brittany Widner et al.   ANALYTICAL CHEMISTRY

Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea

(2013) Rachel E A Horak et al.   ISME Journal

An Analysis of Thaumarchaeota Populations from the Northern Gulf of Mexico

(2013) Bradley B. Tolar et al.   Frontiers in Microbiology

Look@NanoSIMS - a tool for the analysis of nanoSIMS data in environmental microbiology

(2012) Lubos Polerecky et al.   ENVIRONMENTAL MICROBIOLOGY

Role for urea in nitrification by polar marine Archaea

(2012) L. Alonso-Saez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrite oxidation in the Namibian oxygen minimum zone

(2011) Jessika Füssel et al.   ISME Journal

A critical assessment of the occurrence and extend of oxygen contamination during anaerobic incubations utilizing commercially available vials

(2011) Loreto De Brabandere et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

An isotope dilution method to measure nitrification rates in the northern Gulf of Mexico and other eutrophic waters

(2010) Stephen A. Carini et al.   CONTINENTAL SHELF RESEARCH

Inter-annual recurrence of archaeal assemblages in the coastal NW Mediterranean Sea (Blanes Bay Microbial Observatory)

(2010) Pierre E. Galand et al.   LIMNOLOGY AND OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

(2009) P. Lam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Removal of nitrite with sulfamic acid for nitrate N and O isotope analysis with the denitrifier method

(2009) Julie Granger et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA