Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics

Impact of temperature and substrate concentration on degradation rates of acetate, propionate and hydrogen and their links to microbial community structure

(2018) Jing Zhao et al.   BIORESOURCE TECHNOLOGY

Two-year microbial adaptation during hydrogen-mediated biogas upgrading process in a serial reactor configuration

(2018) L. Treu et al.   BIORESOURCE TECHNOLOGY

Biogas upgrading and utilization: Current status and perspectives

(2018) Irini Angelidaki et al.   BIOTECHNOLOGY ADVANCES

Performance and genome-centric metagenomics of thermophilic single and two-stage anaerobic digesters treating cheese wastes

(2018) Alessandra Fontana et al.   WATER RESEARCH

Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants

(2018) Stefano Campanaro et al.   WATER RESEARCH

Hydrogen-Fueled Microbial Pathways in Biogas Upgrading Systems Revealed by Genome-Centric Metagenomics

(2018) Laura Treu et al.   Frontiers in Microbiology

In-situ biogas upgrading in thermophilic granular UASB reactor: key factors affecting the hydrogen mass transfer rate

(2016) Ilaria Bassani et al.   BIORESOURCE TECHNOLOGY

Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

(2016) Stefano Campanaro et al.   Biotechnology for Biofuels

Untangling the Effect of Fatty Acid Addition at Species Level Revealed Different Transcriptional Responses of the Biogas Microbial Community Members

(2016) Laura Treu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines

(2016) Belen Torondel et al.   Microbial Biotechnology

Biogas Upgrading via Hydrogenotrophic Methanogenesis in Two-Stage Continuous Stirred Tank Reactors at Mesophilic and Thermophilic Conditions

(2015) Ilaria Bassani et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Oxidative stress response and nitrogen utilization are strongly variable in Saccharomyces cerevisiae wine strains with different fermentation performances

(2014) Laura Treu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Anaerobic digestion of food waste for volatile fatty acids (VFAs) production with different types of inoculum: Effect of pH

(2014) Kun Wang et al.   BIORESOURCE TECHNOLOGY

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Investigation into the effect of high concentrations of volatile fatty acids in anaerobic digestion on methanogenic communities

(2014) Ingrid H. Franke-Whittle et al.   WASTE MANAGEMENT

Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

(2014) M. Vital et al.   mBio

GroopM: an automated tool for the recovery of population genomes from related metagenomes

(2014) Michael Imelfort et al.   PeerJ

A review of the production and applications of waste-derived volatile fatty acids

(2013) Wee Shen Lee et al.   CHEMICAL ENGINEERING JOURNAL

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community

(2013) Marius Vital et al.   Microbiome

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

Polyhydroxyalkanoate production from fermented volatile fatty acids: Effect of pH and feeding regimes

(2012) Hong Chen et al.   BIORESOURCE TECHNOLOGY

Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces

(2012) B. Dridi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Dark fermentation on biohydrogen production: Pure culture

(2011) Duu-Jong Lee et al.   BIORESOURCE TECHNOLOGY

Pilot-Scale Waste Activated Sludge Alkaline Fermentation, Fermentation Liquid Separation, and Application of Fermentation Liquid To Improve Biological Nutrient Removal

(2011) Xiang Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Syntrophic degradation of proteinaceous materials by the thermophilic strains Coprothermobacter proteolyticus and Methanothermobacter thermautotrophicus

(2011) Kengo Sasaki et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Biogas production: current state and perspectives

(2009) Peter Weiland   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Renewable hydrogen production

(2007) John Turner et al.   INTERNATIONAL JOURNAL OF ENERGY RESEARCH