Disorganized Gut Microbiome Contributed to Liver Cirrhosis Progression: A Meta-Omics-Based Study

Role of the Gut Microbiome in the Pathogenesis of Obesity and Obesity-Related Metabolic Dysfunction

(2017) Kristien E. Bouter et al.   GASTROENTEROLOGY

Bacterial Unculturability and the Formation of Intercellular Metabolic Networks

(2017) Samay Pande et al.   TRENDS IN MICROBIOLOGY

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

(2017) Christopher J. Stewart et al.   Microbiome

Alternative fermentation pathway of cinnamic acid production via phenyllactic acid

(2016) Shunsuke Masuo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Gut microbiome and liver diseases

(2016) Herbert Tilg et al.   GUT

Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled by an integrated meta-omics-based approach

(2016) Federica Del Chierico et al.   HEPATOLOGY

Ruminococcus gnavusE1 modulates mucin expression and intestinal glycosylation

(2016) F. Graziani et al.   JOURNAL OF APPLIED MICROBIOLOGY

Lactobacillus salivarius reverse diabetes-induced intestinal defense impairment in mice through non-defensin protein

(2016) Pei-Hsuan Chung et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Changes in the Microbiome in Cirrhosis and Relationship to Complications: Hepatic Encephalopathy, Spontaneous Bacterial Peritonitis, and Sepsis

(2016) Jatinder Lachar et al.   SEMINARS IN LIVER DISEASE

Severity of atopic disease inversely correlates with intestinal microbiota diversity and butyrate-producing bacteria

(2015) L. Nylund et al.   ALLERGY

Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides

(2015) Audrey Rivière et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

(2015) Genivaldo Gueiros Z. Silva et al.   BIOINFORMATICS

Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function

(2015) Caleb J. Kelly et al.   Cell Host & Microbe

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

(2015) Jun Yu et al.   GUT

Gut mucosal microbiome across stages of colorectal carcinogenesis

(2015) Geicho Nakatsu et al.   Nature Communications

Conducting a Microbiome Study

(2014) Julia K. Goodrich et al.   CELL

Human serum albumin, systemic inflammation, and cirrhosis

(2014) Vicente Arroyo et al.   JOURNAL OF HEPATOLOGY

Liver cirrhosis

(2014) Emmanuel A Tsochatzis et al.   LANCET

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

(2014) Chengwei Luo et al.   NUCLEIC ACIDS RESEARCH

Anti-Inflammatory Properties of Streptococcus salivarius, a Commensal Bacterium of the Oral Cavity and Digestive Tract

(2013) Ghalia Kaci et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Activated intestinal macrophages in patients with cirrhosis release NO and IL-6 that may disrupt intestinal barrier function

(2013) Johannie Du Plessis et al.   JOURNAL OF HEPATOLOGY

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Haemophilus parainfluenzae has a limited core lipopolysaccharide repertoire with no phase variation

(2012) Rosanna E. B. Young et al.   GLYCOCONJUGATE JOURNAL

Second infections independently increase mortality in hospitalized patients With cirrhosis: the north american consortium for the study of end-stage liver disease (NACSELD) experience

(2012) Jasmohan S. Bajaj et al.   HEPATOLOGY

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

(2012) Jens Roat Kultima et al.   PLoS One

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Inhibition of the NF-κB Pathway in Human Intestinal Epithelial Cells by Commensal Streptococcus salivarius

(2011) Ghalia Kaci et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Colonic Contribution to Uremic Solutes

(2011) P. A. Aronov et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Changes of Fecal Bifidobacterium Species in Adult Patients with Hepatitis B Virus-Induced Chronic Liver Disease

(2011) Min Xu et al.   MICROBIAL ECOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Enteric dysbiosis associated with a mouse model of alcoholic liver disease

(2010) Arthur W. Yan et al.   HEPATOLOGY

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Intestinal Permeability in Cirrhotic Patients With and Without Spontaneous Bacterial Peritonitis: Is the Ring Closed?

(2009) Emidio Scarpellini et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Molecularly imprinted polymers for solid-phase extraction of 1-methyladenosine from human urine

(2009) Sonia Scorrano et al.   ANALYTICA CHIMICA ACTA

Liver cirrhosis

(2008) Detlef Schuppan et al.   LANCET