Genome Sequencing and Pan-Genome Analysis of 23 Corallococcus spp. Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

(2018) Jongsik Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural products from myxobacteria: novel metabolites and bioactivities

(2017) J. Herrmann et al.   NATURAL PRODUCT REPORTS

New Insights into the Diversity of the Genus Faecalibacterium

(2017) Leandro Benevides et al.   Frontiers in Microbiology

Myxobacteria Are Able to Prey Broadly upon Clinically-Relevant Pathogens, Exhibiting a Prey Range Which Cannot Be Explained by Phylogeny

(2017) Paul G. Livingstone et al.   Frontiers in Microbiology

In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas

(2017) Phuong N. Tran et al.   Frontiers in Microbiology

Myxobacteria in high moor and fen: An astonishing diversity in a neglected extreme habitat

(2017) Kathrin I. Mohr et al.   MicrobiologyOpen

The Chemical Ecology of Predatory Soil Bacteria

(2016) Brandon L. Findlay   ACS Chemical Biology

Isolation of Coralmycins A and B, Potent Anti-Gram Negative Compounds from the Myxobacteria Corallococcus coralloides M23

(2016) Yu Jin Kim et al.   JOURNAL OF NATURAL PRODUCTS

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa

(2016) Vartul Sangal et al.   Scientific Reports

Composition of distinct sub-proteomes in Myxococcus xanthus: metabolic cost and amino acid availability

(2015) David E. Whitworth et al.   AMINO ACIDS

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Ten years of pan-genome analyses

(2015) George Vernikos et al.   CURRENT OPINION IN MICROBIOLOGY

Insights into Structure–Activity Relationships of Bacterial RNA Polymerase Inhibiting Corallopyronin Derivatives

(2015) Till F. Schäberle et al.   JOURNAL OF NATURAL PRODUCTS

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Fungal metabolic gene clusters—caravans traveling across genomes and environments

(2015) Jennifer H. Wisecaver et al.   Frontiers in Microbiology

A Brief Review of Software Tools for Pangenomics

(2015) Jingfa Xiao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

(2014) Egon A Ozer et al.   BMC GENOMICS

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

(2014) J. Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Corallorazines from the Myxobacterium Corallococcus coralloides

(2014) Alexander Schmitz et al.   JOURNAL OF NATURAL PRODUCTS

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite

(2013) Csaba Kerepesi et al.   GENE

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Complete Genome Sequence of the Fruiting Myxobacterium Corallococcus coralloides DSM 2259

(2012) S. Huntley et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Predatory activity of Myxococcus xanthus outer-membrane vesicles and properties of their hydrolase cargo

(2012) A. G. L. Evans et al.   MICROBIOLOGY-SGM

Antibiotic Production by Myxobacteria Plays a Role in Predation

(2011) Y. Xiao et al.   JOURNAL OF BACTERIOLOGY

Expanded phylogeny of myxobacteria and evidence for cultivation of the ‘unculturables’

(2010) Ronald Garcia et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an Opinion

(2009) E. Lang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating the size of the bacterial pan-genome

(2009) Pascal Lapierre et al.   TRENDS IN GENETICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Genomes and knowledge – a questionable relationship?

(2008) David E. Whitworth   TRENDS IN MICROBIOLOGY