First Viruses Infecting the Marine Diatom Guinardia delicatula

Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan

(2017) Yuji Tomaru et al.   HYDROBIOLOGIA

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA viruses as major contributors to Antarctic virioplankton

(2016) Jaclyn A. Miranda et al.   ENVIRONMENTAL MICROBIOLOGY

Zoosporic parasites infecting marine diatoms – A black box that needs to be opened

(2016) Bettina Scholz et al.   Fungal Ecology

Morphological and genetic diversity of Beaufort Sea diatoms with high contributions from theChaetoceros neogracilisspecies complex

(2016) Sergio Balzano et al.   JOURNAL OF PHYCOLOGY

Virion Structure of Israeli Acute Bee Paralysis Virus

(2016) Edukondalu Mullapudi et al.   JOURNAL OF VIROLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Insights into global diatom distribution and diversity in the world’s ocean

(2016) Shruti Malviya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri

(2016) Sheree Yau et al.   PLoS Pathogens

Ecological connectivity shapes quasispecies structure of RNA viruses in an Antarctic lake

(2015) A. López-Bueno et al.   MOLECULAR ECOLOGY

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Potential roles for recently discovered chytrid parasites in the dynamics of harmful algal blooms

(2015) Frank H. Gleason et al.   Fungal Biology Reviews

Discovery of Two Novel Viruses Expands the Diversity of Single-Stranded DNA and Single-Stranded RNA Viruses Infecting a Cosmopolitan Marine Diatom

(2014) Kei Kimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature alters algicidal activity of DNA and RNA viruses infecting Chaetoceros tenuissimus

(2014) Y Tomaru et al.   AQUATIC MICROBIAL ECOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Characterization of RNA Viruses in Tropical Seawater Using Targeted PCR and Metagenomics

(2014) A. I. Culley et al.   mBio

High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities

(2014) Julia A. Gustavsen et al.   Frontiers in Microbiology

Isolation and Characterization of a Single-Stranded DNA Virus Infecting the Marine Diatom Chaetoceros sp. Strain SS628-11 Isolated from Western JAPAN

(2013) Kei Kimura et al.   PLoS One

New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis

(2013) Yuji Tomaru et al.   Scientific Reports

Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession

(2012) Ulrich Sommer et al.   Annual Review of Ecology Evolution and Systematics

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Isolation and characterization of a single-stranded RNA virus that infects the marine planktonic diatomChaetocerossp. (SS08-C03)

(2012) Yuji Tomaru et al.   PHYCOLOGICAL RESEARCH

Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. (strain TG07-C28)

(2012) Kensuke Toyoda et al.   Plankton & Benthos Research

Isolation and Characterization of a Single-Stranded DNA Virus Infecting Chaetoceros lorenzianus Grunow

(2011) Yuji Tomaru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of diatom viruses on the western coast of Japan

(2011) Y Tomaru et al.   AQUATIC MICROBIAL ECOLOGY

Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations

(2011) Cécile Lepere et al.   FEMS MICROBIOLOGY ECOLOGY

Long-term changes in the seasonality of selected diatoms related to grazers and environmental conditions

(2011) Merja H. Schlüter et al.   JOURNAL OF SEA RESEARCH

Direct Iterative Protein Profiling (DIPP) - an Innovative Method for Large-scale Protein Detection Applied to Budding Yeast Mitosis

(2011) Régis Lavigne et al.   MOLECULAR & CELLULAR PROTEOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Isolation and Characterization of a Single-Stranded RNA Virus Infecting the Bloom-Forming Diatom Chaetoceros socialis

(2009) Y. Tomaru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of viruses in reclaimed water

(2009) Karyna Rosario et al.   ENVIRONMENTAL MICROBIOLOGY

Helgoland Roads, North Sea: 45 Years of Change

(2009) Karen Helen Wiltshire et al.   Estuaries and Coasts

The life of diatoms in the world's oceans

(2009) E. Virginia Armbrust   NATURE

Metagenomic Analysis of RNA Viruses in a Fresh Water Lake

(2009) Appolinaire Djikeng et al.   PLoS One

Isolation and Characterization of a Single-Stranded RNA Virus Infecting the Marine Planktonic Diatom Chaetoceros tenuissimus Meunier

(2008) Y. Shirai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

(2008) Eugene V. Koonin et al.   NATURE REVIEWS MICROBIOLOGY

Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros debilis

(2007) Y Tomaru et al.   AQUATIC MICROBIAL ECOLOGY