Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila

Circadian clock neurons constantly monitor environmental temperature to set sleep timing

(2018) Swathi Yadlapalli et al.   NATURE

Striking circadian neuron diversity and cycling of Drosophila alternative splicing

(2018) Qingqing Wang et al.   eLife

Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster

(2017) Esteban J. Beckwith et al.   GENETICS

RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides

(2017) Katharine C. Abruzzi et al.   PLoS Genetics

Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster

(2017) Esteban J. Beckwith et al.   GENETICS

The Drosophila Clock Neuron Network Features Diverse Coupling Modes and Requires Network-wide Coherence for Robust Circadian Rhythms

(2016) Zepeng Yao et al.   Cell Reports

Prp4 Kinase Grants the License to Splice: Control of Weak Splice Sites during Spliceosome Activation

(2016) Daniela Eckert et al.   PLoS Genetics

Novel Genes Involved in Controlling Specification of Drosophila FMRFamide Neuropeptide Cells

(2015) Caroline Bivik et al.   GENETICS

Regulation of alternative splicing inDrosophilaby 56 RNA binding proteins

(2015) Angela N. Brooks et al.   GENOME RESEARCH

Functional Splicing Network Reveals Extensive Regulatory Potential of the Core Spliceosomal Machinery

(2015) Panagiotis Papasaikas et al.   MOLECULAR CELL

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Drosophila TIM Binds Importin α1, and Acts as an Adapter to Transport PER to the Nucleus

(2015) A. Reum Jang et al.   PLoS Genetics

Novel Genes Involved in Controlling Specification of Drosophila FMRFamide Neuropeptide Cells

(2015) Caroline Bivik et al.   GENETICS

Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis

(2014) Young-Ju Kwon et al.   BMC PLANT BIOLOGY

Specificity in Circadian Clock Feedback from Targeted Reconstitution of the NuRD Corepressor

(2014) Jin Young Kim et al.   MOLECULAR CELL

A day in the life of the spliceosome

(2014) A. Gregory Matera et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Role forLSMgenes in the regulation of circadian rhythms

(2014) Soledad Perez-Santángelo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SR proteins control a complex network of RNA-processing events

(2014) Todd Bradley et al.   RNA

Phosphorylation of a constitutive serine inhibits BK channel variants containing the alternate exon “SRKR”

(2013) Chris Shelley et al.   JOURNAL OF GENERAL PHYSIOLOGY

ATAXIN-2 Activates PERIOD Translation to Sustain Circadian Rhythms in Drosophila

(2013) C. Lim et al.   SCIENCE

A Role for Drosophila ATX2 in Activation of PER Translation and Circadian Behavior

(2013) Y. Zhang et al.   SCIENCE

Cooperative Interaction between Phosphorylation Sites on PERIOD Maintains Circadian Period in Drosophila

(2013) David S. Garbe et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Genomic analysis reveals novel connections between alternative splicing and circadian regulatory networks

(2012) S. Perez-Santangelo et al.   Briefings in Functional Genomics

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses inArabidopsis

(2012) Pil Joon Seo et al.   PLANT CELL

Speed control: cogs and gears that drive the circadian clock

(2012) Xiangzhong Zheng et al.   TRENDS IN NEUROSCIENCES

NEMO/NLK Phosphorylates PERIOD to Initiate a Time-Delay Phosphorylation Circuit that Sets Circadian Clock Speed

(2011) Joanna C. Chiu et al.   CELL

A Key Temporal Delay in the Circadian Cycle ofDrosophilaIs Mediated by a Nuclear Localization Signal in the Timeless Protein

(2011) Lino Saez et al.   GENETICS

Pre-mRNA splicing: where and when in the nucleus

(2011) Joonhee Han et al.   TRENDS IN CELL BIOLOGY

Circadian Organization of Behavior and Physiology in Drosophila

(2010) Ravi Allada et al.   Annual Review of Physiology

Light and Temperature Control the Contribution of Specific DN1 Neurons to Drosophila Circadian Behavior

(2010) Yong Zhang et al.   CURRENT BIOLOGY

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Human PRP4 kinase is required for stable tri-snRNP association during spliceosomal B complex formation

(2010) Marc Schneider et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Genome-wide RNAi Screen for Modifiers of the Circadian Clock in Human Cells

(2009) Eric E. Zhang et al.   CELL

The Spliceosome: Design Principles of a Dynamic RNP Machine

(2009) Markus C. Wahl et al.   CELL

A Plastic Clock: How Circadian Rhythms Respond to Environmental Cues in Drosophila

(2008) Raphaelle Dubruille et al.   MOLECULAR NEUROBIOLOGY