Chromatin mapping identifies BasR, a key regulator of bacteria-triggered production of fungal secondary metabolites

Potential of Burkholderia seminalis TC3.4.2R3 as Biocontrol Agent Against Fusarium oxysporum Evaluated by Mass Spectrometry Imaging

(2017) Francisca Diana da Silva Araújo et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Antagonistic bacteria disrupt calcium homeostasis and immobilize algal cells

(2017) Prasad Aiyar et al.   Nature Communications

KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans

(2016) Agnieszka Gacek-Matthews et al.   PLoS Genetics

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests

(2015) Bernat Gel et al.   BIOINFORMATICS

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Histone modification and chromatin remodeling during NER

(2015) Raymond Waters et al.   DNA REPAIR

Epigenetic Regulation of Chromatin States inSchizosaccharomyces pombe

(2015) Robin C. Allshire et al.   Cold Spring Harbor Perspectives in Biology

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

(2014) S. Priebe et al.   BIOINFORMATICS

A field guide to whole-genome sequencing, assembly and annotation

(2014) Robert Ekblom et al.   Evolutionary Applications

Histone Methylation Has Dynamics Distinct from Those of Histone Acetylation in Cell Cycle Reentry from Quiescence

(2014) P. Mews et al.   MOLECULAR AND CELLULAR BIOLOGY

Nitrogen regulation of fungal secondary metabolism in fungi

(2014) Bettina Tudzynski   Frontiers in Microbiology

Distinct Amino Acids of Histone H3 Control Secondary Metabolism in Aspergillus nidulans

(2013) Hans-Wilhelm Nützmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Legionella pneumophila Effector RomA Uniquely Modifies Host Chromatin to Repress Gene Expression and Promote Intracellular Bacterial Replication

(2013) Monica Rolando et al.   Cell Host & Microbe

Bacterium Induces Cryptic Meroterpenoid Pathway in the Pathogenic FungusAspergillus fumigatus

(2013) Claudia C. König et al.   CHEMBIOCHEM

Mitochondrial degradation during starvation is selective and temporally distinct from bulk autophagy in yeast

(2013) Akinori Eiyama et al.   FEBS LETTERS

The Genome Sequence of Streptomyces lividans 66 Reveals a Novel tRNA-Dependent Peptide Biosynthetic System within a Metal-Related Genomic Island

(2013) Pablo Cruz-Morales et al.   Genome Biology and Evolution

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

TheAspergillusGenome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

(2013) Gustavo C. Cerqueira et al.   NUCLEIC ACIDS RESEARCH

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Upgrading Fungal Gene Expression on Demand: Improved Systems for Doxycycline-Dependent Silencing in Aspergillus fumigatus

(2012) Christoph Helmschrott et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia

(2012) Lena Studt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The chromatin code of fungal secondary metabolite gene clusters

(2012) Agnieszka Gacek et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Dynamic transitions in RNA polymerase II density profiles during transcription termination

(2012) A. R. Grosso et al.   GENOME RESEARCH

The first step in the biosynthesis of cocaine in Erythroxylum coca: the characterization of arginine and ornithine decarboxylases

(2012) Teresa Docimo et al.   PLANT MOLECULAR BIOLOGY

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

Two Induced Fungal Polyketide Pathways Converge into Antiproliferative Spiroanthrones

(2011) Kirstin Scherlach et al.   CHEMBIOCHEM

Heterochromatin Is Required for Normal Distribution of Neurospora crassa CenH3

(2011) K. M. Smith et al.   MOLECULAR AND CELLULAR BIOLOGY

Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation

(2011) H.-W. Nutzmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward an Integrated Model of Capsule Regulation in Cryptococcus neoformans

(2011) Brian C. Haynes et al.   PLoS Pathogens

Aspernidine A and B, prenylated isoindolinone alkaloids from the model fungus Aspergillus nidulans

(2010) Kirstin Scherlach et al.   JOURNAL OF ANTIBIOTICS

Nucleosome sequence preferences influence in vivo nucleosome organization

(2010) Noam Kaplan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans

(2009) V. Schroeckh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleosome Positioning and Histone H3 Acetylation Are Independent Processes in theAspergillus nidulans prnD-prnBBidirectional Promoter

(2008) Yazmid Reyes-Dominguez et al.   EUKARYOTIC CELL

Five new members of the Streptomyces violaceusniger 16S rRNA gene clade: Streptomyces castelarensis sp. nov., comb. nov., Streptomyces himastatinicus sp. nov., Streptomyces mordarskii sp. nov., Streptomyces rapamycinicus sp. nov. and Streptomyces ruanii sp. nov.

(2008) Y. Kumar et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY