Review
Biochemistry & Molecular Biology
Sang-Kyu Lee, Juho Lee, Mingyu Jo, Jong-Seong Jeon
Summary: Starch is the primary storage carbohydrate in mature pollen grains and plays an important role in inducing male sterility and hybrid rice production. However, the details of starch biosynthesis and breakdown in pollen are still unknown, which is crucial for understanding the process and its applications.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Plant Sciences
Rahele Panahabadi, Asadollah Ahmadikhah, Lauren S. McKee, Paer K. Ingvarsson, Naser Farrokhi
Summary: The genetic variability of MLG and starch contents in rice whole grains was analyzed, revealing a negative correlation between MLG content and grain starch content. A new genome-wide association study identified seven significant QTLs associated with MLG content and two QTLs associated with starch content. Novel genes related to MLG content included a hexose transporter and anthocyanidin 5,3-O-glucosyltransferase.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Plant Sciences
Ryutaro Morita, Naoko Crofts, Satoko Miura, Ken-ichi Ikeda, Naohiro Aoki, Hiroshi Fukayama, Naoko Fujita
Summary: This study investigates the role of different starch synthase (SS) isozymes in the biosynthesis of starch in rice. By using mutants with disruptions in the SSIIIb gene, it was found that SSIIIb is responsible for the synthesis of long chain amylopectin in the leaf sheath and leaf blade. On the other hand, SSI is involved in the synthesis of short chain amylopectin. These findings provide a better understanding of starch biosynthesis in different parts of rice.
PLANT AND CELL PHYSIOLOGY
(2023)
Article
Plant Sciences
Birendra Prasad Shaw, Sudhanshu Sekhar, Binay Bhushan Panda, Gyanasri Sahu, Tilak Chandra, Ajay Kumar Parida
Summary: The increase in rice production through breeding programmes is declining due to poor grain filling in the basal spikelets. Biotechnological interventions targeting gene expression and enzyme activities can increase rice production and maintain grain quality.
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2022)
Article
Multidisciplinary Sciences
Anqi Wang, Yanhui Jing, Qiao Cheng, Hongju Zhou, Lijun Wang, Wanxin Gong, Liquan Kou, Guifu Liu, Xiangbing Meng, Mingjiang Chen, Haiyan Ma, Xiaoli Shu, Hong Yu, Dianxing Wu, Jiayang Li
Summary: The sedentary lifestyle and refined food consumption lead to obesity, type 2 diabetes, and related complications. Daily consumption of foods rich in resistant starch (RS) can potentially reduce the incidence of these diseases. However, breeding high-RS rice varieties remains challenging. In this study, we identified a high-RS mutant rs4, which had a RS content of -10.8% in cooked rice. The genetic study revealed that the loss-of-function SSIIIb and SSIIIa together with a strong Wx allele contributed to the high-RS phenotype of the rs4 mutant.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2023)
Article
Agriculture, Multidisciplinary
Zongfei Zhang, Jiaxin Tan, Yuting Chen, Zhangyuqi Sun, Xin Yan, Jiexiu Ouyang, Shaobo Li, Xin Wang
Summary: A new fructokinase, OsFRK3, was identified and its knockou mutants, osfrk3-1 and osfrk3-2, were created using CRISPR/Cas9 technology. The mutants showed decreased 1000-grain weight, grain width, grain thickness, endosperm filling rate, and seed total starch content, while the levels of sucrose and fructose were increased. The expression levels of OsGBSS1, OsBEIIb, OsPFP1 beta, and OsAGPL1 were significantly decreased in the mutants. These results suggest that OsFRK3 positively regulates starch accumulation by influencing sugar metabolism.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2023)
Article
Plant Sciences
Ibrahim Khan, Sikandar Khan, Yong Zhang, Jianping Zhou
Summary: Exhaustive searches of the rice genome revealed 30 potential OsDof genes, with analyses conducted on their subcellular localization, phylogenetic relationship, conserved motifs, chromosomal allocation, expression patterns, and interaction networks. The Dof proteins in rice were found to be distributed into 4 groups, showing significant variances in expression levels across tissues and developmental stages. Protein-protein correlation network analysis indicated potential overlapping functions and co-expression among some OsDofs, providing insights for further studies and development of high-quality rice varieties.
Article
Biochemistry & Molecular Biology
Baomei Wu, Chenchen Xie, Qiang Zhang, Binbin Wang, Weizhong Liu
Summary: A transgenic rice line was obtained by T-DNA insertion of ascorbate peroxidase 2, resulting in differences in morphology, physical and chemical properties of starch granules between apx2 and wild type seeds. The starch granules in apx2 were smaller in size with low crystallinity and high amylose content compared to the wild type.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2021)
Article
Agronomy
Pei Li, Lihan Wang, Hongbo Liu, Meng Yuan
Summary: Sugar transportation and sugar-to-starch metabolism are crucial processes in seed development, and OsSWEET genes in rice play essential roles in these processes. Knocking out certain OsSWEET genes resulted in decreased pollen viability and weakened seed traits, indicating their importance in seed development.
Article
Agronomy
Ayumu Takatsuka, Tomohiko Kazama, Kinya Toriyama
Summary: The study obtained a Tadukan-type CMS line and a restorer line through backcrossing, determined the whole-genome sequences of the TAA mitochondria, and identified the orf312 gene specific to this genome, which showed differential expression patterns at different growth stages.
Article
Biochemistry & Molecular Biology
Jiajia Wang, Yiting Liu, Songping Hu, Jing Xu, Jinqiang Nian, Xiaoping Cao, Minmin Chen, Jiangsu Cen, Xiong Liu, Zhihai Zhang, Dan Liu, Li Zhu, Jiang Hu, Deyong Ren, Zhenyu Gao, Lan Shen, Guojun Dong, Qiang Zhang, Qing Li, Sibin Yu, Qian Qian, Guangheng Zhang
Summary: Leaf morphology is an important trait for plant architecture and stress resistance. In this study, a rice mutant, ltr1, with rumpled leaves and decreased grain yield was identified. LTR1, a wax synthesis gene, was found to be constitutively expressed in various tissues, with higher expression in leaves and panicles. Overexpression of LTR1 increased grain yield and positively regulated salt stress by affecting water and ion homeostasis. These findings provide insights into the molecular mechanisms of leaf morphogenesis and stress response, and offer a potential strategy for stress-tolerance breeding.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Agronomy
Da-gang Chen, Xin-qiao Zhou, Ke Chen, Ping-li Chen, Jie Guo, Chuan-guang Liu, You-ding Chen
Summary: Leaf thickness is an important trait in rice, affecting photosynthesis and sink-resource efficiency. Through hybridization and genetic sequencing analysis, we identified chromosome 9 as the primary contributor to leaf thickness, and also found several other genomic regions associated with leaf thickness. These results provide promising leads for studying yield production in rice.
MOLECULAR BREEDING
(2022)
Article
Plant Sciences
Zhiming Chen, Yongsheng Wang, Rongyu Huang, Zesen Zhang, Jinpeng Huang, Feng Yu, Yaohai Lin, Yuchun Guo, Kangjing Liang, Yuanchang Zhou, Fangyu Chen
Summary: The study reveals the important regulatory role of OsCKI1 in rice leaves, and its impact on starch metabolism and leaf senescence. Through physiological, transcriptomic, and proteomic analysis of mutant and wild-type leaves, significant differential expression of key genes and proteins related to starch and sugar metabolism, apoptosis, and ABA signaling was observed. The protein-protein interaction network may also play a role in promoting premature senescence. This study provides a new direction for further exploration of the regulatory mechanism of temporary starch and apoptosis mediated by LSES1/OsCKI1 in rice.
Article
Plant Sciences
Jiana Chen, Fangbo Cao, Mohammed Albaqami, Min Huang, Salah F. Abou-Elwafa
Summary: Proteomic analysis of rice grains with contrasting grain-filling rates identified differentially expressed proteins (DEPs) related to starch and sucrose metabolism. Enzymes involved in carbohydrate metabolism were found to be more abundant in the high grain-filling rate cultivar, suggesting their essential roles in rice grain development. The study also revealed that during grain filling, processes such as carbohydrate metabolism, energy metabolism, and amino acids metabolism were enriched, highlighting the importance of DEPs in rice grain development.
JOURNAL OF PLANT GROWTH REGULATION
(2022)
Article
Plant Sciences
Areeqa Shamshad, Muhammad Rashid, Qamar uz Zaman
Summary: In this study, 25 randomly dispersed HSF genes with significant DNA binding domains were identified in the rice genome. Gene structural analysis revealed that all members of the OsHSF family share 10 identical amino acid sequences. Rice HSF family genes are widely distributed in vegetative organs and exhibit high levels of expression in reproductive tissues. Tandem duplication and repetition may have contributed to the development of novel genes in the rice genome. OsHSFs play a significant role in gene expression regulation, regulation in primary metabolism, and tolerance to environmental stress, according to gene networking analyses.
Article
Plant Sciences
Zhenzhen Cao, Qian Zhao, Gang Pan, Kesu Wei, Lujian Zhou, Fangmin Cheng
PLANT GROWTH REGULATION
(2017)
Article
Food Science & Technology
Jianchao Liu, Qian Zhao, Lujian Zhou, Zhenzhen Cao, Chunhai Shi, Fangmin Cheng
JOURNAL OF CEREAL SCIENCE
(2017)
Article
Agriculture, Multidisciplinary
Da Su, Lujian Zhou, Qian Zhao, Gang Pan, Fangmin Cheng
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2018)
Article
Plant Sciences
Qian Zhao, Lujian Zhou, Jianchao Liu, Zhenzhen Cao, Xiaoxia Du, Fudeng Huang, Gang Pan, Fangmin Cheng
PLANT CELL REPORTS
(2018)
Article
Plant Sciences
Lujian Zhou, Yu Ye, Qian Zhao, Xiaoxia Du, Shamsu Ado Zakari, Da Su, Gang Pan, Fangmin Cheng
PLANT GROWTH REGULATION
(2018)
Article
Plant Sciences
Qian Zhao, Lujian Zhou, Jianchao Liu, Xiaoxia Du, Muhammad-Asad-Ullah Asad, Fudeng Huang, Gang Pan, Fangmin Cheng
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2018)
Article
Multidisciplinary Sciences
Zhaowei Li, Fubiao Wang, Qian Zhao, Jianchao Liu, Fangmin Cheng
Review
Biochemistry & Molecular Biology
Muhammad Asad Ullah Asad, Shamsu Ado Zakari, Qian Zhao, Lujian Zhou, Yu Ye, Fangmin Cheng
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2019)
Article
Biochemistry & Molecular Biology
Syed Hassan Raza Zaidi, Shamsu Ado Zakari, Qian Zhao, Ali Raza Khan, Jawad Munawar Shah, Fangmin Cheng
Article
Biochemistry & Molecular Biology
Qian Zhao, Yu Ye, Zhanyu Han, Lujian Zhou, Xianyue Guan, Gang Pan, Muhammad-Asad-Ullah Asad, Fangmin Cheng
Article
Agronomy
Li Zhaowei, Zhao Qian, Cheng Fangmin
Article
Plant Sciences
Qian Zhao, Xianyue Guan, Lujian Zhou, Yanqiu Xu, Muhammad-Asad-Ullah Asad, Gang Pan, Fangmin Cheng
Summary: High temperature during meiosis leads to heat injury in pollen viability and floret fertility due to heat-induced endoplasmic reticulum (ER) stress and ROS damage. The role of PDILs in regulating heat injury and its relation to HT-induced ROS generation in rice anthers is not well understood.
ENVIRONMENTAL AND EXPERIMENTAL BOTANY
(2023)
Article
Plant Sciences
Qian Zhao, Xianyue Guan, Lujian Zhou, Muhammad-Asad-Ullah Asad, Yanqiu Xu, Gang Pan, Fangmin Cheng
Summary: High temperatures cause pollen abortion and poor floret fertility in rice due to excessive accumulation of reactive oxygen species (ROS) in the developing anthers. However, the relationships between accumulation of abscisic acid (ABA) and ROS, and their effects on tapetum-specific programmed cell death (PCD) in HT-stressed anthers are poorly characterised.
PLANT CELL AND ENVIRONMENT
(2023)
Article
Agronomy
Qian Zhao, Xiaoxia Du, Zhanyu Han, Yu Ye, Gang Pan, Muhammad-Asad-Ullah Asad, Qifa Zhou, Fangmin Cheng