Genome sequences identify three families of Coleoptera as morphologically derived click beetles (Elateridae)

Reanalyzing the Palaeoptera problem – The origin of insect flight remains obscure

(2018) Sabrina Simon et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera

(2018) Dominik Kusy et al.   Frontiers in Zoology

Incomplete sclerotization and phylogeny: The phylogenetic classification of Plastocerus (Coleoptera: Elateroidea)

(2018) Ladislav Bocak et al.   PLoS One

Evolutionary history of Coleoptera revealed by extensive sampling of genes and species

(2018) Shao-Qian Zhang et al.   Nature Communications

Phylogeny and evolution of Müllerian mimicry in aposematic Dilophotes: evidence for advergence and size-constraints in evolution of mimetic sexual dimorphism

(2018) Michal Motyka et al.   Scientific Reports

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Total evidence phylogeny and the evolution of adult bioluminescence in fireflies (Coleoptera: Lampyridae)

(2017) Gavin J. Martin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

(2017) Sushma Reddy et al.   SYSTEMATIC BIOLOGY

The molecular phylogeny of Omalisidae (Coleoptera) defines the family limits and demonstrates low dispersal propensity and ancient vicariance patterns

(2017) MATEJ BOCEK et al.   SYSTEMATIC ENTOMOLOGY

Contentious relationships in phylogenomic studies can be driven by a handful of genes

(2017) Xing-Xing Shen et al.   Nature Ecology & Evolution

Sulfoluciferin is Biosynthesized by a Specialized Luciferin Sulfotransferase in Fireflies

(2016) Timothy R. Fallon et al.   BIOCHEMISTRY

Why grow up? A perspective on insect strategies to avoid metamorphosis

(2016) DINO P. MCMAHON et al.   ECOLOGICAL ENTOMOLOGY

Organization and comparative analysis of the mitochondrial genomes of bioluminescent Elateroidea (Coleoptera: Polyphaga)

(2016) Danilo T. Amaral et al.   GENE

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

The discovery of Iberobaeniidae (Coleoptera: Elateroidea): a new family of beetles from Spain, with immatures detected by environmental DNA sequencing

(2016) L. Bocak et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

The peril of dating beetles

(2016) EMMANUEL F. A. TOUSSAINT et al.   SYSTEMATIC ENTOMOLOGY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool

(2015) Jennifer M. Shelton et al.   BMC GENOMICS

Family-Level Sampling of Mitochondrial Genomes in Coleoptera: Compositional Heterogeneity and Phylogenetics

(2015) Martijn J. T. N. Timmermans et al.   Genome Biology and Evolution

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution

(2015) DUANE D. MCKENNA et al.   SYSTEMATIC ENTOMOLOGY

Molecular Phylogeny Reveals High Diversity, Geographic Structure and Limited Ranges in Neotenic Net-Winged Beetles Platerodrilus (Coleoptera: Lycidae)

(2015) Michal Masek et al.   PLoS One

FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies

(2014) Patrick Kück et al.   Frontiers in Zoology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The comprehensive phylogeny of the superfamily Elateroidea (Coleoptera: Elateriformia)

(2014) Robin Kundrata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes

(2014) Monica Poelchau et al.   NUCLEIC ACIDS RESEARCH

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification

(2013) LADISLAV BOCAK et al.   SYSTEMATIC ENTOMOLOGY

A new species of Dexoris (Coleoptera: Lycidae) and parallel evolution of brachyptery in the soft-bodied elateroid beetles

(2013) LADISLAV BOCAK et al.   ZOOTAXA

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

(2013) Christopher I Keeling et al.   GENOME BIOLOGY

The Juvenile Hormone Signaling Pathway in Insect Development

(2012) Marek Jindra et al.   Annual Review of Entomology

How does juvenile hormone control insect metamorphosis and reproduction?

(2012) Lynn M. Riddiford   GENERAL AND COMPARATIVE ENDOCRINOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Phylogeny of the Coleoptera Based on Morphological Characters of Adults and Larvae

(2011) John F. Lawrence et al.   ANNALES ZOOLOGICI

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Revision of the family Omalisidae (Coleoptera, Elateroidea)

(2011) Ladislav Bocak et al.   INSECT SYSTEMATICS & EVOLUTION

The phylogeny and limits of Elateridae (Insecta, Coleoptera): is there a common tendency of click beetles to soft-bodiedness and neoteny?

(2011) Robin Kundrata et al.   ZOOLOGICA SCRIPTA

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

(2010) Patrick Kück et al.   Frontiers in Zoology

Phylogenetic analysis of Elateriformia (Coleoptera: Polyphaga) based on larval characters

(2010) R. G. Beutel   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion

(2009) Bernhard Misof et al.   SYSTEMATIC BIOLOGY

Defensive chemistry of lycid beetles and of mimetic cerambycid beetles that feed on them

(2008) Thomas Eisner et al.   CHEMOECOLOGY

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

Multiple ancient origins of neoteny in Lycidae (Coleoptera): consequences for ecology and macroevolution

(2008) L. Bocak et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES