Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features
出版年份 2018 全文链接
标题
Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature America, Inc
发表日期
2018-10-05
DOI
10.1038/s41467-018-06664-6
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Loss of KDM6A Activates Super-Enhancers to Induce Gender-Specific Squamous-like Pancreatic Cancer and Confers Sensitivity to BET Inhibitors
- (2018) Jaclyn Andricovich et al. CANCER CELL
- CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression
- (2017) Gang Ren et al. MOLECULAR CELL
- Tissue-specific CTCF–cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo
- (2017) Lars L. P. Hanssen et al. NATURE CELL BIOLOGY
- Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
- (2016) Denes Hnisz et al. CELL
- Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
- (2016) Rongxin Fang et al. CELL RESEARCH
- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- CTCF: making the right connections
- (2016) Rodolfo Ghirlando et al. GENES & DEVELOPMENT
- Chromatin Domains: The Unit of Chromosome Organization
- (2016) Jesse R. Dixon et al. MOLECULAR CELL
- Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin
- (2016) Sean Whalen et al. NATURE GENETICS
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
- (2016) Maxwell R Mumbach et al. NATURE METHODS
- Erratum: Organization and function of the 3D genome
- (2016) Boyan Bonev et al. NATURE REVIEWS GENETICS
- ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis
- (2016) Guipeng Li et al. NUCLEIC ACIDS RESEARCH
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- The 3D Genome in Transcriptional Regulation and Pluripotency
- (2014) David U. Gorkin et al. Cell Stem Cell
- The UCSC Genome Browser database: 2015 update
- (2014) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- The Spatial Organization of the Human Genome
- (2013) Wendy A. Bickmore Annual Review of Genomics and Human Genetics
- Causal analysis approaches in Ingenuity Pathway Analysis
- (2013) Andreas Krämer et al. BIOINFORMATICS
- Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
- (2013) Jakob Lovén et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
- (2013) Job Dekker et al. NATURE REVIEWS GENETICS
- Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
- (2013) J. Zuin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Widespread plasticity in CTCF occupancy linked to DNA methylation
- (2012) H. Wang et al. GENOME RESEARCH
- Myeloma cells inhibit non-canonical wnt co-receptor ror2 expression in human bone marrow osteoprogenitor cells: effect of wnt5a/ror2 pathway activation on the osteogenic differentiation impairment induced by myeloma cells
- (2012) M Bolzoni et al. LEUKEMIA
- Analysis of long-range chromatin interactions using Chromosome Conformation Capture
- (2012) Natalia Naumova et al. METHODS
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks
- (2012) Kuljeet Singh Sandhu et al. Cell Reports
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- The antagonist of the JAK-1/STAT-1 signaling pathway improves the severity of cerulein-stimulated pancreatic injury via inhibition of NF-κB activity
- (2011) Yuan INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
- CTCF Controls Expression and Chromatin Architecture of the Human Major Histocompatibility Complex Class II Locus
- (2010) P. Majumder et al. MOLECULAR AND CELLULAR BIOLOGY
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- Nucleosome dynamics define transcriptional enhancers
- (2010) Housheng Hansen He et al. NATURE GENETICS
- Cell type specificity of chromatin organization mediated by CTCF and cohesin
- (2010) Chunhui Hou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
- (2008) S. Cuddapah et al. GENOME RESEARCH
- The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions
- (2008) Parimal Majumder et al. JOURNAL OF EXPERIMENTAL MEDICINE
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