RNA Switches for Synthetic Biology

A synthetic suicide riboswitch for the high-throughput screening of metabolite production in Saccharomyces cerevisiae

(2015) Sang-Woo Lee et al.   METABOLIC ENGINEERING

Optimization of a whole-cell biocatalyst by employing genetically encoded product sensors inside nanolitre reactors

(2015) Andreas Meyer et al.   Nature Chemistry

High-throughput cellular RNA device engineering

(2015) Brent Townshend et al.   NATURE METHODS

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers

(2015) Amin Espah Borujeni et al.   NUCLEIC ACIDS RESEARCH

Engineering of Bacillus subtilis Strains To Allow Rapid Characterization of Heterologous Diguanylate Cyclases and Phosphodiesterases

(2014) Xiaohui Gao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of Gene Expression in Diverse Cyanobacterial Species by Using Theophylline-Responsive Riboswitches

(2014) Amy T. Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Toehold Switches: De-Novo-Designed Regulators of Gene Expression

(2014) Alexander A. Green et al.   CELL

RNAstructure: web servers for RNA secondary structure prediction and analysis

(2013) Stanislav Bellaousov et al.   NUCLEIC ACIDS RESEARCH

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

(2013) Tomasz Puton et al.   NUCLEIC ACIDS RESEARCH

Synthetic Biology: Advancing the Design of Diverse Genetic Systems

(2013) Yen-Hsiang Wang et al.   Annual Review of Chemical and Biomolecular Engineering

Development of a 2,4-Dinitrotoluene-Responsive Synthetic Riboswitch in E. coli Cells

(2012) Molly E. Davidson et al.   ACS Chemical Biology

Post-transcriptional Boolean computation by combining aptazymes controlling mRNA translation initiation and tRNA activation

(2012) Benedikt Klauser et al.   Molecular BioSystems

De novo design of a synthetic riboswitch that regulates transcription termination

(2012) M. Wachsmuth et al.   NUCLEIC ACIDS RESEARCH

A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity

(2012) Joe C. Liang et al.   NUCLEIC ACIDS RESEARCH

Engineering Protein Switches: Sensors, Regulators, and Spare Parts for Biology and Biotechnology

(2011) Misha V. Golynskiy et al.   CHEMBIOCHEM

Selection of tetracycline inducible self-cleaving ribozymes as synthetic devices for gene regulation in yeast

(2011) Alexander Wittmann et al.   Molecular BioSystems

Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors

(2011) A. Ogawa   RNA

Synthetic Riboswitches That Induce Gene Expression in Diverse Bacterial Species

(2010) S. Topp et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A FACS-Based Approach to Engineering Artificial Riboswitches

(2008) Casey C. Fowler et al.   CHEMBIOCHEM

Engineering Complex Riboswitch Regulation by Dual Genetic Selection

(2008) Vandana Sharma et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Model-guided design of ligand-regulated RNAi for programmable control of gene expression

(2008) Chase L Beisel et al.   Molecular Systems Biology

A flow cytometry-based screen for synthetic riboswitches

(2008) Sean A. Lynch et al.   NUCLEIC ACIDS RESEARCH

Capturing Hammerhead Ribozyme Structures in Action by Modulating General Base Catalysis

(2008) Young-In Chi et al.   PLOS BIOLOGY