Prevalence and persistence of transmitted drug resistance mutations in the German HIV-1 Seroconverter Study Cohort

Increasing proportions of HIV-1 non-B subtypes and of NNRTI resistance between 2013 and 2016 in Germany: Results from the national molecular surveillance of new HIV-diagnoses

(2018) Andrea Hauser et al.   PLoS One

National molecular surveillance of recently acquired HIV infections in Germany, 2013 to 2014

(2017) Andrea Hauser et al.   Eurosurveillance

Prevalence of drug resistance among HIV-1 treatment-naive patients in Greece during 2003–2015: Transmitted drug resistance is due to onward transmissions

(2017) D. Paraskevis et al.   INFECTION GENETICS AND EVOLUTION

Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1–Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing

(2017) Dana S Clutter et al.   JOURNAL OF INFECTIOUS DISEASES

The Role of HIV-1 Drug-Resistant Minority Variants in Treatment Failure

(2017) Natalia Stella-Ascariz et al.   JOURNAL OF INFECTIOUS DISEASES

Expanding HIV-1 subtype B transmission networks among men who have sex with men in Poland

(2017) Miłosz Parczewski et al.   PLoS One

Inferring HIV-1 Transmission Dynamics in Germany From Recently Transmitted Viruses

(2016) Kaveh Pouran Yousef et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Enhanced surveillance of HIV-1 drug resistance in recently infected MSM in the UK

(2016) Emma Cunningham et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK

(2015) Raphaël Mourad et al.   AIDS

Characteristics and spread to the native population of HIV-1 non-B subtypes in two European countries with high migration rate

(2015) Kenny Dauwe et al.   BMC INFECTIOUS DISEASES

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe

(2015) L. Marije Hofstra et al.   CLINICAL INFECTIOUS DISEASES

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

(2015) Manon Ragonnet-Cronin et al.   JOURNAL OF INFECTIOUS DISEASES

Interplay Between Transmitted and Acquired HIV Type 1 Drug Resistance: Reasons for a Disconnect

(2015) A. De Luca et al.   JOURNAL OF INFECTIOUS DISEASES

Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012

(2015) Wan-Lin Yang et al.   JOURNAL OF INFECTIOUS DISEASES

Trends in Transmission of Drug Resistance and Prevalence of Non-B Subtypes in Patients with Acute or Recent HIV-1 Infection in Barcelona in the Last 16 Years (1997-2012)

(2015) Juan Ambrosioni et al.   PLoS One

Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds

(2015) Wan-Lin Yang et al.   PLoS Pathogens

Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

(2014) Dineke Frentz et al.   BMC INFECTIOUS DISEASES

Transmitted HIV drug resistance in antiretroviral-treatment-naive patients from Poland differs by transmission category and subtype

(2014) Miłosz Parczewski et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Assessment of Ambiguous Base Calls in HIV-1 pol Population Sequences as a Biomarker for Identification of Recent Infections in HIV-1 Incidence Studies

(2014) K. Meixenberger et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Altered Viral Fitness and Drug Susceptibility in HIV-1 Carrying Mutations That Confer Resistance to Nonnucleoside Reverse Transcriptase and Integrase Strand Transfer Inhibitors

(2014) Z. Hu et al.   JOURNAL OF VIROLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

First Line Treatment Response in Patients with Transmitted HIV Drug Resistance and Well Defined Time Point of HIV Infection: Updated Results from the German HIV-1 Seroconverter Study

(2014) Fabia zu Knyphausen et al.   PLoS One

Trends and Predictors of Transmitted Drug Resistance (TDR) and Clusters with TDR in a Local Belgian HIV-1 Epidemic

(2014) Andrea-Clemencia Pineda-Peña et al.   PLoS One

Estimating Trends in the Proportion of Transmitted and Acquired HIV Drug Resistance in a Long Term Observational Cohort in Germany

(2014) Daniel Schmidt et al.   PLoS One

Basis for Early and Preferential Selection of the E138K Mutation in HIV-1 Reverse Transcriptase

(2013) Matthew McCallum et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Effect of Mutations at Position E138 in HIV-1 Reverse Transcriptase and Their Interactions with the M184I Mutation on Defining Patterns of Resistance to Nonnucleoside Reverse Transcriptase Inhibitors Rilpivirine and Etravirine

(2013) Hong-Tao Xu et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study

(2013) Sara M. Drescher et al.   CLINICAL INFECTIOUS DISEASES

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools

(2013) Andrea-Clemencia Pineda-Peña et al.   INFECTION GENETICS AND EVOLUTION

Persistence of HIV-1 Transmitted Drug Resistance Mutations

(2013) Hannah Castro et al.   JOURNAL OF INFECTIOUS DISEASES

Deep sequencing does not reveal additional transmitted mutations in patients diagnosed with HIV-1 variants with single nucleoside reverse transcriptase inhibitor resistance mutations

(2012) M Pingen et al.   HIV MEDICINE

Biochemical Mechanism of HIV-1 Resistance to Rilpivirine

(2012) Kamalendra Singh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genotypic and Phenotypic Characterization of HIV-1 Isolates Obtained From Patients on Rilpivirine Therapy Experiencing Virologic Failure in the Phase 3 ECHO and THRIVE Studies

(2011) Laurence Rimsky et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Evolutionary pathways of transmitted drug-resistant HIV-1

(2011) M. Pingen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

'Sentinel' mutations in standard population sequencing can predict the presence of HIV-1 reverse transcriptase major mutations detectable only by ultra-deep pyrosequencing

(2011) C. Alteri et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Differential Persistence of Transmitted HIV-1 Drug Resistance Mutation Classes

(2011) Vivek Jain et al.   JOURNAL OF INFECTIOUS DISEASES

Prevalence of Transmitted Drug Resistance and Impact of Transmitted Resistance on Treatment Success in the German HIV-1 Seroconverter Cohort

(2010) Barbara Bartmeyer et al.   PLoS One

Transmission of drug-resistant HIV-1 in Europe remains limited to single classes

(2009)   AIDS

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection

(2009) Sabine Yerly et al.   AIDS

Transmission networks of HIV-1 among men having sex with men in the Netherlands

(2009) Daniela Bezemer et al.   AIDS

Detection of Human Immunodeficiency Virus (HIV) Type 1 M184V and K103N Minority Variants in Patients with Primary HIV Infection

(2009) T. A. Toni et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Long‐Term Trends of HIV Type 1 Drug Resistance Prevalence among Antiretroviral Treatment–Experienced Patients in Switzerland

(2009) Viktor von Wyl et al.   CLINICAL INFECTIOUS DISEASES

Understanding transmitted HIV resistance through the experience in the USA

(2009) Babafemi Taiwo   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Transmission of Drug‐Resistant HIV‐1 Is Stabilizing in Europe

(2009) Jurgen Vercauteren et al.   JOURNAL OF INFECTIOUS DISEASES

Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

(2009) Diane E. Bennett et al.   PLoS One

Persistence of Transmitted Drug Resistance among Subjects with Primary Human Immunodeficiency Virus Infection

(2008) S. J. Little et al.   JOURNAL OF VIROLOGY

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics

(2008) Fraser Lewis et al.   PLOS MEDICINE