Insight into the evolution and functional characteristics of the pan‐genome assembly from sesame landraces and modern cultivars

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

(2018) Bhavna Hurgobin et al.   PLANT BIOTECHNOLOGY JOURNAL

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

(2017) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

Assembly and comparison of two closely related Brassica napus genomes

(2017) Philipp E. Bayer et al.   PLANT BIOTECHNOLOGY JOURNAL

The pangenome of hexaploid bread wheat

(2017) Juan D. Montenegro et al.   PLANT JOURNAL

Genome of wild olive and the evolution of oil biosynthesis

(2017) Turgay Unver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Emerging Oilseed Crop Sesamum indicum Enters the “Omics” Era

(2017) Komivi Dossa et al.   Frontiers in Plant Science

Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map

(2016) Linhai Wang et al.   BMC GENOMICS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The pangenome of an agronomically important crop plant Brassica oleracea

(2016) Agnieszka A. Golicz et al.   Nature Communications

Analysis of Genetic Diversity and Population Structure of Sesame Accessions from Africa and Asia as Major Centers of Its Cultivation

(2016) Komivi Dossa et al.   Genes

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences

(2016) Gaik Tamazian et al.   GigaScience

The rubber tree genome shows expansion of gene family associated with rubber biosynthesis

(2016) Nyok-Sean Lau et al.   Scientific Reports

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

Agronomic performance and grain quality of sesame (Sesamum indicum L.) landraces and improved varieties grown in a Mediterranean environment

(2015) Umberto Anastasi et al.   GENETIC RESOURCES AND CROP EVOLUTION

Assembly: a resource for assembled genomes at NCBI

(2015) Paul A. Kitts et al.   NUCLEIC ACIDS RESEARCH

Regulation of the NADPH Oxidase RBOHD During Plant Immunity

(2015) Yasuhiro Kadota et al.   PLANT AND CELL PHYSIOLOGY

Towards plant pangenomics

(2015) Agnieszka A. Golicz et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic discovery for oil production and quality in sesame

(2015) Xin Wei et al.   Nature Communications

Beyond genomic variation - comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage

(2014) Ke Lin et al.   BMC GENOMICS

Deep resequencing reveals allelic variation in Sesamum indicum

(2014) Linhai Wang et al.   BMC PLANT BIOLOGY

Development of Simple Sequence Repeat (SSR) Markers of Sesame (Sesamum indicum) from a Genome Survey

(2014) Xin Wei et al.   MOLECULES

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

(2014) Ying-hui Li et al.   NATURE BIOTECHNOLOGY

Insights into the Maize Pan-Genome and Pan-Transcriptome

(2014) C. N. Hirsch et al.   PLANT CELL

Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis

(2014) Linhai Wang et al.   GENOME BIOLOGY

Architecture and evolution of a minute plant genome

(2013) Enrique Ibarra-Laclette et al.   NATURE

Submergence Confers Immunity Mediated by the WRKY22 Transcription Factor in Arabidopsis

(2013) F.-C. Hsu et al.   PLANT CELL

Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection

(2012) Yanxin Zhang et al.   BMC GENETICS

HPLC Analysis of Seed Sesamin and Sesamolin Variation in a Sesame Germplasm Collection in China

(2012) Linhai Wang et al.   JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY

Effector-Triggered Immunity Signaling: From Gene-for-Gene Pathways to Protein-Protein Interaction Networks

(2012) Walter Gassmann et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Evolution and Expression of Tandem Duplicated Maize Flavonol Synthase Genes

(2012) María Lorena Falcone Ferreyra et al.   Frontiers in Plant Science

Comparative analysis of genetic diversity of sesame (Sesamum indicum L.) from Vietnam and Cambodia using agro-morphological and molecular markers

(2011) Toan Duc Pham et al.   HEREDITAS

Crystal Structure of Human β-Galactosidase

(2011) Umeharu Ohto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mugsy: fast multiple alignment of closely related whole genomes

(2010) Samuel V. Angiuoli et al.   BIOINFORMATICS

Pseudogenization of the Umami Taste Receptor Gene Tas1r1 in the Giant Panda Coincided with its Dietary Switch to Bamboo

(2010) H. Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

GUIDANCE: a web server for assessing alignment confidence scores

(2010) O. Penn et al.   NUCLEIC ACIDS RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Functional Characterization of the Arabidopsis  -Ketoacyl-Coenzyme A Reductase Candidates of the Fatty Acid Elongase

(2009) F. Beaudoin et al.   PLANT PHYSIOLOGY

Innate Immunity in Plants: An Arms Race Between Pattern Recognition Receptors in Plants and Effectors in Microbial Pathogens

(2009) T. Boller et al.   SCIENCE

Pattern-recognition receptors in plant innate immunity

(2008) Cyril Zipfel   CURRENT OPINION IN IMMUNOLOGY

Identification of the Wax Ester Synthase/Acyl-Coenzyme A:Diacylglycerol Acyltransferase WSD1 Required for Stem Wax Ester Biosynthesis in Arabidopsis

(2008) F. Li et al.   PLANT PHYSIOLOGY