Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development

Netpredictor: R and Shiny package to perform drug-target network analysis and prediction of missing links

(2018) Abhik Seal et al.   BMC BIOINFORMATICS

Single cell transcriptomics in neuroscience: cell classification and beyond

(2018) Bosiljka Tasic   CURRENT OPINION IN NEUROBIOLOGY

Using single‐cell genomics to understand developmental processes and cell fate decisions

(2018) Jonathan A Griffiths et al.   Molecular Systems Biology

Scaling single-cell genomics from phenomenology to mechanism

(2017) Amos Tanay et al.   NATURE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

(2017) Tomasz J. Nowakowski et al.   SCIENCE

Molecular and cellular reorganization of neural circuits in the human lineage

(2017) André M. M. Sousa et al.   SCIENCE

CC2D1A and CC2D1B regulate degradation and signaling of EGFR and TLR4

(2016) Rakesh Deshar et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

MicroRNA‐34/449 controls mitotic spindle orientation during mammalian cortex development

(2016) Juan Pablo Fededa et al.   EMBO JOURNAL

Single-cell sequencing of the small-RNA transcriptome

(2016) Omid R Faridani et al.   NATURE BIOTECHNOLOGY

Genome-wide, integrative analysis implicates microRNA dysregulation in autism spectrum disorder

(2016) Ye E Wu et al.   NATURE NEUROSCIENCE

Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development

(2016) Tomasz J. Nowakowski et al.   NEURON

A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA

(2016) Neha Rani et al.   NEURON

Molecular Identity of Human Outer Radial Glia during Cortical Development

(2015) Alex A. Pollen et al.   CELL

Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor

(2015) M. E. Jonsson et al.   DEVELOPMENT

Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion

(2015) M. Florio et al.   SCIENCE

A reciprocal antagonism between miR-376c and TGF-β signaling regulates neural differentiation of human pluripotent stem cells

(2014) Juli Liu et al.   FASEB JOURNAL

Transcriptional landscape of the prenatal human brain

(2014) Jeremy A. Miller et al.   NATURE

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

(2014) Alex A Pollen et al.   NATURE BIOTECHNOLOGY

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

(2014) Michael J Moore et al.   Nature Protocols

Novel Primate miRNAs Coevolved with Ancient Target Genes in Germinal Zone-Specific Expression Patterns

(2014) Mary L. Arcila et al.   NEURON

Transcriptome-wide Discovery of microRNA Binding Sites in Human Brain

(2014) Ryan L. Boudreau et al.   NEURON

c-Myc-dependent transcriptional regulation of cell cycle and nucleosomal histones during oligodendrocyte differentiation

(2014) L. Magri et al.   NEUROSCIENCE

Two miRNA clusters, miR-34b/c and miR-449, are essential for normal brain development, motile ciliogenesis, and spermatogenesis

(2014) J. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-epithelial stem cells and cortical interneuron production in the human ganglionic eminences

(2013) David V Hansen et al.   NATURE NEUROSCIENCE

Chronological Changes in MicroRNA Expression in the Developing Human Brain

(2013) Michael P. Moreau et al.   PLoS One

MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain

(2013) T. J. Nowakowski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Searching the coding region for microRNA targets

(2013) R. M. Marin et al.   RNA

Meier-Gorlin syndrome: Growth and secondary sexual development of a microcephalic primordial dwarfism disorder

(2012) Sonja A. de Munnik et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Site identification in high-throughput RNA–protein interaction data

(2012) Philip J. Uren et al.   BIOINFORMATICS

MicroRNAs tune cerebral cortical neurogenesis

(2012) M-L Volvert et al.   CELL DEATH AND DIFFERENTIATION

miR-221 and miR-222 promote Schwann cell proliferation and migration by targeting LASS2 after sciatic nerve injury

(2012) B. Yu et al.   JOURNAL OF CELL SCIENCE

Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain

(2012) Miao He et al.   NEURON

A network of genetic repression and derepression specifies projection fates in the developing neocortex

(2012) K. Srinivasan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs

(2011) M. Schnall-Levin et al.   GENOME RESEARCH

Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome

(2011) Duane L Guernsey et al.   NATURE GENETICS

miR-124 acts through CoREST to control onset of Sema3A sensitivity in navigating retinal growth cones

(2011) Marie-Laure Baudet et al.   NATURE NEUROSCIENCE

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-Driven Developmental Remodeling in the Brain Distinguishes Humans from Other Primates

(2011) Mehmet Somel et al.   PLOS BIOLOGY

MicroRNAs and Cellular Phenotypy

(2010) Kenneth S. Kosik   CELL

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

SFARI Gene: an evolving database for the autism research community

(2010) S. Banerjee-Basu et al.   Disease Models & Mechanisms

Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs

(2010) M. Schnall-Levin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Missense Mutation in a Highly Conserved Alternate Exon of Dynamin-1 Causes Epilepsy in Fitful Mice

(2010) Rebecca M. Boumil et al.   PLoS Genetics

Human Freud-2/CC2D1B: A Novel Repressor of Postsynaptic Serotonin-1A Receptor Expression

(2009) Mahmoud R. Hadjighassem et al.   BIOLOGICAL PSYCHIATRY

Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps

(2009) Sung Wook Chi et al.   NATURE

Promotion of embryonic cortico-cerebral neuronogenesis by miR-124

(2009) Nicola Maiorano et al.   Neural Development

MicroRNAs Potentiate Neural Development

(2009) Sarah K. Fineberg et al.   NEURON

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Heterogeneous dysregulation of microRNAs across the autism spectrum

(2008) Kawther Abu-Elneel et al.   NEUROGENETICS

Impaired neurogenesis in embryonic spinal cord of Phgdh knockout mice, a serine deficiency disorder model

(2008) Yuriko Kawakami et al.   NEUROSCIENCE RESEARCH

A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

(2008) J. J. Forman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA