Broccoli Fluorets: Split Aptamers as a User-Friendly Fluorescent Toolkit for Dynamic RNA Nanotechnology

Dynamic Behavior of RNA Nanoparticles Analyzed by AFM on a Mica/Air Interface

(2018) Sameer Sajja et al.   LANGMUIR

Optimized Assembly of a Multifunctional RNA-Protein Nanostructure in a Cell-Free Gene Expression System

(2018) Matthaeus Schwarz-Schilling et al.   NANO LETTERS

Structure and Composition Define Immunorecognition of Nucleic Acid Nanoparticles

(2018) Enping Hong et al.   NANO LETTERS

Development of a genetically encodable FRET system using fluorescent RNA aptamers

(2018) Mette D. E. Jepsen et al.   Nature Communications

Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells

(2018) Alexis Autour et al.   Nature Communications

RNA Fibers as Optimized Nanoscaffolds for siRNA Coordination and Reduced Immunological Recognition

(2018) Lauren Rackley et al.   ADVANCED FUNCTIONAL MATERIALS

RNA–DNA fibers and polygons with controlled immunorecognition activate RNAi, FRET and transcriptional regulation of NF-κB in human cells

(2018) Weina Ke et al.   NUCLEIC ACIDS RESEARCH

Fluorogenic RNA Aptamers: A Nano-platform for Fabrication of Simple and Combinatorial Logic Gates

(2018) Victoria Goldsworthy et al.   Nanomaterials

Imaging RNA polymerase III transcription using a photostable RNA–fluorophore complex

(2017) Wenjiao Song et al.   Nature Chemical Biology

Functionally-interdependent shape-switching nanoparticles with controllable properties

(2017) Justin R. Halman et al.   NUCLEIC ACIDS RESEARCH

Protein-driven RNA nanostructured devices that function in vitro and control mammalian cell fate

(2017) Tomonori Shibata et al.   Nature Communications

Dynamic Control of Aptamer–Ligand Activity Using Strand Displacement Reactions

(2017) Jonathan Lloyd et al.   ACS Synthetic Biology

Multistrand Structure Prediction of Nucleic Acid Assemblies and Design of RNA Switches

(2016) Eckart Bindewald et al.   NANO LETTERS

RNA Fluorescence with Light-Up Aptamers

(2016) Jonathan Ouellet   Frontiers in Chemistry

Fluorescence Blinking as an Output Signal for Biosensing

(2016) Brandon Roark et al.   ACS Sensors

In-Gel Imaging of RNA Processing Using Broccoli Reveals Optimal Aptamer Expression Strategies

(2015) Grigory S. Filonov et al.   CHEMISTRY & BIOLOGY

RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications

(2015) Hui Li et al.   Nano Today

In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles

(2014) Kirill A. Afonin et al.   ACCOUNTS OF CHEMICAL RESEARCH

Triggering of RNA Interference with RNA–RNA, RNA–DNA, and DNA–RNA Nanoparticles

(2014) Kirill A. Afonin et al.   ACS Nano

Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution

(2014) Grigory S. Filonov et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Multifunctional RNA Nanoparticles

(2014) Kirill A. Afonin et al.   NANO LETTERS

Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

(2014) Katherine Deigan Warner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Fluorescent Monitoring of RNA Assembly and Processing Using the Split-Spinach Aptamer

(2014) Tucker A. Rogers et al.   ACS Synthetic Biology

A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat–containing RNA

(2013) Rita L Strack et al.   NATURE METHODS

Activation of different split functionalities on re-association of RNA–DNA hybrids

(2013) Kirill A. Afonin et al.   Nature Nanotechnology

Co-transcriptional production of RNA–DNA hybrids for simultaneous release of multiple split functionalities

(2013) Kirill A. Afonin et al.   NUCLEIC ACIDS RESEARCH

DNA nanomachines as evolved molecular Beacons for in vitro and in vivo detection

(2013) Shuo Feng et al.   TALANTA

Co-transcriptional Assembly of Chemically Modified RNA Nanoparticles Functionalized with siRNAs

(2012) Kirill A. Afonin et al.   NANO LETTERS

Fluorescence Imaging of Cellular Metabolites with RNA

(2012) Jeremy S. Paige et al.   SCIENCE

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

A Boost for the Emerging Field of RNA Nanotechnology

(2011) Girish C. Shukla et al.   ACS Nano

Challenges and opportunities for structural DNA nanotechnology

(2011) Andre V. Pinheiro et al.   Nature Nanotechnology

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

Multi-Input RNAi-Based Logic Circuit for Identification of Specific Cancer Cells

(2011) Z. Xie et al.   SCIENCE

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

In vitro assembly of cubic RNA-based scaffolds designed in silico

(2010) Kirill A. Afonin et al.   Nature Nanotechnology

Logic integration of mRNA signals by an RNAi-based molecular computer

(2010) Zhen Xie et al.   NUCLEIC ACIDS RESEARCH