Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes
出版年份 2018 全文链接
标题
Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes
作者
关键词
-
出版物
JOURNAL OF VIROLOGY
Volume 93, Issue 1, Pages -
出版商
American Society for Microbiology
发表日期
2018-10-11
DOI
10.1128/jvi.01342-18
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Native RNA-Sequencing Throws its Hat into the Transcriptomics Ring
- (2018) Shobbir Hussain TRENDS IN BIOCHEMICAL SCIENCES
- Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs
- (2018) Tetsutaro Hayashi et al. Nature Communications
- A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61
- (2018) Daniel P. Depledge et al. Nature Communications
- Multi-Platform Sequencing Approach Reveals a Novel Transcriptome Profile in Pseudorabies Virus
- (2018) Norbert Moldován et al. Frontiers in Microbiology
- Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA
- (2018) Roger Volden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome
- (2018) Matthew W. Keller et al. Scientific Reports
- HSV1 latent transcription and non-coding RNA: A critical retrospective
- (2017) Dane Phelan et al. JOURNAL OF NEUROIMMUNOLOGY
- Transcriptome-wide characterization of human cytomegalovirus in natural infection and experimental latency
- (2017) Shu Cheng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Massively parallel digital transcriptional profiling of single cells
- (2017) Grace X. Y. Zheng et al. Nature Communications
- Promoting Simultaneous Onset of Viral Gene Expression Among Cells Infected with Herpes Simplex Virus-1
- (2017) Maya Ralph et al. Frontiers in Microbiology
- Long-Read Isoform Sequencing Reveals a Hidden Complexity of the Transcriptional Landscape of Herpes Simplex Virus Type 1
- (2017) Dóra Tombácz et al. Frontiers in Microbiology
- Long-Read Sequencing of Human Cytomegalovirus Transcriptome Reveals RNA Isoforms Carrying Distinct Coding Potentials
- (2017) Zsolt Balázs et al. Scientific Reports
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Global transcript structure resolution of high gene density genomes through multi-platform data integration
- (2016) Tina O'Grady et al. NUCLEIC ACIDS RESEARCH
- Single-cell RNA-sequencing: The future of genome biology is now
- (2016) Simone Picelli RNA Biology
- Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
- (2016) B. B. Lake et al. SCIENCE
- Diverse Strategies Used by Picornaviruses to Escape Host RNA Decay Pathways
- (2016) Wendy Ullmer et al. Viruses-Basel
- High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling
- (2016) Nerea Irigoyen et al. PLoS Pathogens
- A systematic view on influenza induced host shutoff
- (2016) Adi Bercovich-Kinori et al. eLife
- Viral Nucleases Induce an mRNA Degradation-Transcription Feedback Loop in Mammalian Cells
- (2015) Emma Abernathy et al. Cell Host & Microbe
- A Comprehensive RNA Sequencing Analysis of the Adeno-Associated Virus (AAV) Type 2 Transcriptome Reveals Novel AAV Transcripts, Splice Variants, and Derived Proteins
- (2015) Catrin Stutika et al. JOURNAL OF VIROLOGY
- High-Throughput Sequencing Technologies
- (2015) Jason A. Reuter et al. MOLECULAR CELL
- Spatial reconstruction of single-cell gene expression data
- (2015) Rahul Satija et al. NATURE BIOTECHNOLOGY
- Widespread disruption of host transcription termination in HSV-1 infection
- (2015) Andrzej J. Rutkowski et al. Nature Communications
- The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
- (2014) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- KSHV 2.0: A Comprehensive Annotation of the Kaposi's Sarcoma-Associated Herpesvirus Genome Using Next-Generation Sequencing Reveals Novel Genomic and Functional Features
- (2014) Carolina Arias et al. PLoS Pathogens
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Quantitative single-cell RNA-seq with unique molecular identifiers
- (2013) Saiful Islam et al. NATURE METHODS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- Severe Acute Respiratory Syndrome Coronavirus nsp1 Facilitates Efficient Propagation in Cells through a Specific Translational Shutoff of Host mRNA
- (2012) T. Tanaka et al. JOURNAL OF VIROLOGY
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- Decoding Human Cytomegalovirus
- (2012) N. Stern-Ginossar et al. SCIENCE
- ggbio: an R package for extending the grammar of graphics for genomic data
- (2012) Tengfei Yin et al. GENOME BIOLOGY
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Viral subversion of the host protein synthesis machinery
- (2011) Derek Walsh et al. NATURE REVIEWS MICROBIOLOGY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
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