4.7 Article

Non-Covalent Interactions in Molecular Crystals: Exploring the Accuracy of the Exchange-Hole Dipole Moment Model with Local Orbitals

期刊

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
卷 14, 期 11, 页码 5715-5724

出版社

AMER CHEMICAL SOC
DOI: 10.1021/acs.jctc.8b00797

关键词

-

资金

  1. Natural Sciences and Engineering Research Council of Canada (NSERC)
  2. Walter C. Sumner Foundation

向作者/读者索取更多资源

We present the first implementation of the exchange-hole dipole moment (XDM) model in combination with a numerical finite-support local orbital method (the SIESTA method) for the modeling of non-covalent interactions in periodic solids. The XDM model is parametrized for both the B86bPBE and PBE functionals using double-zeta- and triple-zeta-quality basis sets (DZP and TZP). The use of finite-support local orbitals is shown to have minimal impact on the computed dispersion coefficients for van der Waals molecular dimers and small molecular solids. However, the quality of the basis set affects the accuracy of calculated dimer binding energies and molecular-crystal lattice energies quite significantly; the size of the counterpoise correction indicates that this is caused by basis-set incompleteness error. In the case of the DZP basis set, its performance for weakly bound gas-phase dimers is similar to that of a double-zeta (Gaussian basis set without diffuse functions. The new XDM implementation was tested on graphite and phosphorene exfoliation, and on the X23 benchmark set of molecular-crystal lattice energies. Our results indicate that lattice energies similar to plane-wave calculations can be obtained only if the counterpoise correction is applied. Alternatively, the calculated equilibrium geometries are reasonably close to the plane-wave equivalents, and composite approaches in which a single-point plane-wave calculation is used at the XDM/DZP equilibrium geometry yield good accuracy at a significantly lower computational cost.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Physical

Identification of a Nitrenoid Reductive Elimination Pathway in Nickel-Catalyzed C-N Cross-Coupling

Connor M. Simon, Samantha L. Dudra, Ryan T. McGuire, Michael J. Ferguson, Erin R. Johnson, Mark Stradiotto

Summary: This study reveals a new reductive elimination pathway for nickel-catalyzed C-N cross-coupling, involving a bifurcated pathway and a base-promoted pathway for C-N reductive elimination.

ACS CATALYSIS (2022)

Review Chemistry, Multidisciplinary

Delocalization error: The greatest outstanding challenge in density-functional theory

Kyle R. Bryenton, Adebayo A. Adeleke, Stephen G. Dale, Erin R. Johnson

Summary: This article reviews the history of delocalization error in density-functional theory (DFT), provides conceptual interpretations and illustrative examples of its manifestations, and discusses approaches to reduce this error and its interplay with other shortcomings of popular DFAs.

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2023)

Article Chemistry, Multidisciplinary

Controlling anisotropic properties by manipulating the orientation of chiral small molecules

Jessica Wade, Francesco Salerno, Rachel C. Kilbride, Dong Kuk Kim, Julia A. Schmidt, Joel A. Smith, Luc M. LeBlanc, Emma H. Wolpert, Adebayo A. Adeleke, Erin R. Johnson, Jenny Nelson, Tadashi Mori, Kim E. Jelfs, Sandrine Heutz, Matthew J. Fuchter

Summary: Chiral pi-conjugated molecules are a rapidly expanding field of research, and their orientation plays a crucial role in determining functionality and efficiency. This study presents a strategy to control the orientation of a small chiral molecule using organic and inorganic templating layers, enabling independent activation or deactivation of low- and high-energy chiroptical responses.

NATURE CHEMISTRY (2022)

Article Chemistry, Multidisciplinary

Accurate and efficient polymorph energy ranking with XDM-corrected hybrid DFT

Alastair J. A. Price, R. Alex Mayo, Alberto Otero-de-la-Roza, Erin R. Johnson

Summary: Accurate and efficient computation of relative energies of molecular crystal polymorphs is crucial for solid-state pharmaceuticals and other technologically relevant fields. Dispersion-corrected density-functional theory (DFT) has become the leading energy ranking method for crystal structure prediction (CSP). However, planewave implementations of these methods face challenges with large unit cells and semi-local functionals. In this study, the exchange-hole dipole moment (XDM) dispersion correction in the Fritz Haber Institute ab initio materials simulation (FHI-aims) package is shown to provide excellent performance for the energy ranking step of CSP.

CRYSTENGCOMM (2023)

Article Chemistry, Multidisciplinary

XDM-corrected hybrid DFT with numerical atomic orbitals predicts molecular crystal lattice energies with unprecedented accuracy

Alastair J. A. Price, Alberto Otero-de-la-Roza, Erin R. R. Johnson

Summary: The study combines the exchange-hole dipole moment (XDM) dispersion model with numerical atomic orbitals to enhance the performance in calculating the lattice energies of molecular crystals. The new XDM-corrected hybrids not only achieve higher accuracy in predicting lattice energies, but also improve computational efficiency.

CHEMICAL SCIENCE (2023)

Article Chemistry, Physical

Many-body dispersion in model systems and the sensitivity of self-consistent screening

Kyle R. Bryenton, Erin R. Johnson

Summary: London dispersion is a weak intermolecular force that arises from interactions between instantaneous dipole moments. It is the dominant attractive force between nonpolar species and plays a crucial role in determining various properties. Standard methods in density-functional theory do not consider dispersion contributions, so additional correction models such as XDM or MBD are required. Recent studies have focused on the accurate capture of many-body effects on dispersion. By studying quantum harmonic oscillators, we compare the performance of XDM and MBD in terms of dispersion coefficients, energies, and 3-body energy contributions.

JOURNAL OF CHEMICAL PHYSICS (2023)

Article Chemistry, Multidisciplinary

Structural Behavior of Minrecordite Carbonate Mineral upon Compression: Effect of Mg → Zn Chemical Substitution in Dolomite- Type Compounds

David Santamaria-Perez, Raquel Chulia-Jordan, Alberto Otero-de-la-Roza, Javier Ruiz-Fuertes, Julio Pellicer-Porres, Catalin Popescu

Summary: This study investigates the structural behavior and compressibility of the naturally occurring Zn-rich dolomite mineral minrecordite using diamond-anvil cell synchrotron X-ray diffraction. The results reveal that minrecordite exhibits highly anisotropic behavior, with the c axis being 3.3 times more compressible than the a axis. The compression of the [CaO6] and [ZnO6] octahedra, which are the dominant cations in each layer, governs the axial compressibilities and equation of state. Additionally, the study suggests that the observed phase transition in minrecordite is strain-induced and that the high-pressure polymorph is closely related to the CaCO3-II-type structure.

ACS OMEGA (2023)

Article Chemistry, Physical

Accurate Potential Energy Surfaces Using Atom-Centered Potentials and Minimal High-Level Data

Mahsa Nazemi Ashani, Qinan Huang, A. Mackenzie Flowers, Alex Brown, Antoine Aerts, Alberto Otero-de-la-Roza, Gino A. Dilabio

Summary: The β-density functional theory (β-DFT) approach based on atom-centered potentials (ACPs) is shown to be a computationally inexpensive and accurate method for representing potential energy surfaces (PESs) and calculating vibrational frequencies for HONO and HFCO molecules. The ACP-corrected PESs produce small mean absolute errors and compared favorably to the results obtained with higher level of theory. This approach shows promise for representing accurate molecular PESs and calculating molecular properties.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Chemistry, Multidisciplinary

Periodic trends in the structural, electronic, and transport properties of electrenes

Mohammad Rafiee Diznab, Erin R. Johnson, Jesse Maassen

Summary: Two-dimensional layered electrides are atomically thin materials with excess electrons as anions. The goal of this study is to systematically investigate the properties of monolayer and bilayer electrides in the M2X family. Density-functional calculations and electron-phonon scattering calculations were conducted to analyze surface and interstitial charges, work functions, exfoliation energies, Ewald energies, and electronic transport characteristics. The findings suggest that nitrogen-based electrides have higher conductivity than those involving heavier pnictogens, and highlight periodic trends in electrene properties for application selection.

NANOSCALE (2023)

Article Chemistry, Multidisciplinary

Quantitative matching of crystal structures to experimental powder diffractograms

R. Alex Mayo, Katherine M. Marczenko, Erin R. Johnson

Summary: The identification and classification of crystal structures is fundamental in materials science. The VC-xPWDF method presented in this study is able to match collected powder diffractograms of unknown polymorphs to both experimental crystal structures and in silico-generated structures. The method has proven to be effective in correctly identifying similar crystal structures for a set of representative organic compounds.

CHEMICAL SCIENCE (2023)

Article Materials Science, Multidisciplinary

Effects of dispersion corrections on the theoretical description of bulk metals

Adebayo A. Adeleke, Erin R. Johnson

Summary: The addition of a London dispersion correction is necessary for an accurate description of noncovalent interactions. This study examines the ability of dispersion-corrected density functionals to describe the equations of state and predict phase-transition pressures for elemental metals and intermetallic compounds under high pressure. The results highlight the importance of London dispersion physics in the bulk metal description.

PHYSICAL REVIEW B (2023)

Article Chemistry, Multidisciplinary

Development and assessment of an improved powder-diffraction-based method for molecular crystal structure similarity

R. Alex Mayo, Alberto Otero-de-la-Roza, Erin R. Johnson

Summary: Identifying whether two experimental crystal structures correspond to the same polymorph is a challenging problem in crystallography. In this study, a new PXRD-based similarity index and comparison method is proposed, which shows improved agreement compared to the popular COMPACK method. The strengths and weaknesses of each method are evaluated by analyzing the structure pairs for which they disagree. Using COMPACK and VC-PWDF in combination may be successful at narrowing the grey area of difficult-to-compare structures.

CRYSTENGCOMM (2022)

Article Chemistry, Physical

DFT exchange: sharing perspectives on the workhorse of quantum chemistry and materials science

Andrew M. Teale, Trygve Helgaker, Andreas Savin, Carlo Adamo, Balint Aradi, Alexei Arbuznikov, Paul W. Ayers, Evert Jan Baerends, Vincenzo Barone, Patrizia Calaminici, Eric Cances, Emily A. Carter, Pratim Kumar Chattaraj, Henry Chermette, Ilaria Ciofini, T. Daniel Crawford, Frank De Proft, John F. Dobson, Claudia Draxl, Thomas Frauenheim, Emmanuel Fromager, Patricio Fuentealba, Laura Gagliardi, Giulia Galli, Jiali Gao, Paul Geerlings, Nikitas Gidopoulos, Peter M. W. Gill, Paola Gori-Giorgi, Andreas Gorling, Tim Gould, Stefan Grimme, Oleg Gritsenko, Hans Jorgen Aagaard Jensen, Erin R. Johnson, Robert O. Jones, Martin Kaupp, Andreas M. Koster, Leeor Kronik, Anna Krylov, Simen Kvaal, Andre Laestadius, Mel Levy, Mathieu Lewin, Shubin Liu, Pierre-Francois Loos, Neepa T. Maitra, Frank Neese, John P. Perdew, Katarzyna Pernal, Pascal Pernot, Piotr Piecuch, Elisa Rebolini, Lucia Reining, Pina Romaniello, Adrienn Ruzsinszky, Dennis R. Salahub, Matthias Scheffler, Peter Schwerdtfeger, Viktor N. Staroverov, Jianwei Sun, Erik Tellgren, David J. Tozer, Samuel B. Trickey, Carsten A. Ullrich, Alberto Vela, Giovanni Vignale, Tomasz A. Wesolowski, Xin Xu, Weitao Yang

Summary: This paper provides an informal review and discussion on the history, present status, and future of density-functional theory (DFT) by 70 workers in the field. The format of a roundtable discussion allowed participants to express their views through 302 individual contributions to a preset list of 26 questions. Supported by a bibliography of 777 entries, the paper offers a comprehensive snapshot of DFT in 2022.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2022)

暂无数据