Dietary shifts influenced by livestock grazing shape the gut microbiota composition and co-occurrence networks in a local rodent species

Like or dislike: Response of rodents to the odor of plant secondary metabolites

(2017) Sabine C. HANSEN et al.   Integrative Zoology

Network analysis of gut microbiota literature: an overview of the research landscape in non-human animal studies

(2017) Emily L Pascoe et al.   ISME Journal

Small mammal activity alters plant community composition and microbial activity in an old-field ecosystem

(2017) Leigh C. Moorhead et al.   Ecosphere

Changes of diet and dominant intestinal microbes in farmland frogs

(2016) Chun-Wen Chang et al.   BMC MICROBIOLOGY

Sheep grazing causes shift in sex ratio and cohort structure of Brandt's vole: Implication of their adaptation to food shortage

(2016) Guoliang LI et al.   Integrative Zoology

Different-sized grazers have distinctive effects on plant functional composition of an African savannah

(2016) Fons van der Plas et al.   JOURNAL OF ECOLOGY

Early-Life Sugar Consumption Affects the Rat Microbiome Independently of Obesity

(2016) Emily E Noble et al.   JOURNAL OF NUTRITION

Variable responses of human microbiomes to dietary supplementation with resistant starch

(2016) A. Venkataraman et al.   Microbiome

A healthy gastrointestinal microbiome is dependent on dietary diversity

(2016) Mark L. Heiman et al.   Molecular Metabolism

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

(2015) Rachel N. Carmody et al.   Cell Host & Microbe

Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets

(2015) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

(2015) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

Physical, bioactive and sensory quality parameters of reduced sugar chocolates formulated with natural sweeteners as sucrose alternatives

(2015) Ana Belščak-Cvitanović et al.   FOOD CHEMISTRY

Successive sheep grazing reduces population density of Brandt’s voles in steppe grassland by altering food resources: a large manipulative experiment

(2015) Guoliang Li et al.   OECOLOGIA

Collapse of the world's largest herbivores

(2015) W. J. Ripple et al.   Science Advances

Patterns of Gut Bacterial Colonization in Three Primate Species

(2015) Erin A. McKenney et al.   PLoS One

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

(2014) Daniel I. Bolnick et al.   ECOLOGY LETTERS

Plant-herbivore interactions: silicon concentration in tussock sedges and population dynamics of root voles

(2014) Monika Wieczorek et al.   FUNCTIONAL ECOLOGY

Competition and facilitation between a native and a domestic herbivore: trade-offs between forage quantity and quality

(2013) David J. Augustine et al.   ECOLOGICAL APPLICATIONS

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Effects of mammalian herbivore declines on plant communities: observations and experiments in an African savanna

(2013) Hillary S. Young et al.   JOURNAL OF ECOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

The Microbiome and Butyrate Regulate Energy Metabolism and Autophagy in the Mammalian Colon

(2011) Dallas R. Donohoe et al.   Cell Metabolism

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age

(2009) D Mariat et al.   BMC MICROBIOLOGY

Physical defences wear you down: progressive and irreversible impacts of silica on insect herbivores

(2008) Fergus P. Massey et al.   JOURNAL OF ANIMAL ECOLOGY