Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate
出版年份 2019 全文链接
标题
Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate
作者
关键词
-
出版物
ISME Journal
Volume -, Issue -, Pages -
出版商
Springer Nature
发表日期
2019-01-14
DOI
10.1038/s41396-019-0347-6
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Potential for primary productivity in a globally-distributed bacterial phototroph
- (2018) E. D. Graham et al. ISME Journal
- The MAR databases: development and implementation of databases specific for marine metagenomics
- (2017) Terje Klemetsen et al. NUCLEIC ACIDS RESEARCH
- Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio
- (2017) Anne-Catherine Ahn et al. PLoS One
- MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
- (2016) Daniel H. Huson et al. PLoS Computational Biology
- Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks
- (2015) John A. Gerlt et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- The I-TASSER Suite: protein structure and function prediction
- (2015) Jianyi Yang et al. NATURE METHODS
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data
- (2014) S. Poux et al. Database-The Journal of Biological Databases and Curation
- Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean
- (2013) Timothy E Mattes et al. ISME Journal
- Discovery of new enzymes and metabolic pathways by using structure and genome context
- (2013) Suwen Zhao et al. NATURE
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- Rhodobacter sphaeroides Uses a Reductive Route via Propionyl Coenzyme A To Assimilate 3-Hydroxypropionate
- (2011) K. Schneider et al. JOURNAL OF BACTERIOLOGY
- Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes
- (2011) Andrew R. J. Curson et al. NATURE REVIEWS MICROBIOLOGY
- Unusual Regulation of a Leaderless Operon Involved in the Catabolism of Dimethylsulfoniopropionate in Rhodobacter sphaeroides
- (2011) Matthew J. Sullivan et al. PLoS One
- Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organismPelagabacter ubique
- (2011) David J. Schuller et al. PROTEIN SCIENCE
- Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP)
- (2011) Chris R. Reisch et al. Frontiers in Microbiology
- Changes in Dimethylsulfoniopropionate Demethylase Gene Assemblages in Response to an Induced Phytoplankton Bloom
- (2010) Erinn C. Howard et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Complete Genome Sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a Representative of the SAR116 Clade in the Alphaproteobacteria
- (2010) H.-M. Oh et al. JOURNAL OF BACTERIOLOGY
- I-TASSER: a unified platform for automated protein structure and function prediction
- (2010) Ambrish Roy et al. Nature Protocols
- Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome
- (2010) Y. Yin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Deep Sequencing of a Dimethylsulfoniopropionate-Degrading Gene (dmdA) by Using PCR Primer Pairs Designed on the Basis of Marine Metagenomic Data
- (2009) V. A. Varaljay et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies
- (2009) Holly J. Atkinson et al. PLoS One
- Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies
- (2009) Alexandra M. Schnoes et al. PLoS Computational Biology
- I-TASSER server for protein 3D structure prediction
- (2008) Yang Zhang BMC BIOINFORMATICS
- Abundant and diverse bacteria involved in DMSP degradation in marine surface waters
- (2008) Erinn C. Howard et al. ENVIRONMENTAL MICROBIOLOGY
- Dimethylsulfoniopropionate-Dependent Demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi
- (2008) C. R. Reisch et al. JOURNAL OF BACTERIOLOGY
- A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
- (2008) Sean R. Eddy PLoS Computational Biology
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now