Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress

Low Light Availability Alters Root Exudation and Reduces Putative Beneficial Microorganisms in Seagrass Roots

(2018) Belinda C. Martin et al.   Frontiers in Microbiology

Colonizing tropical seagrasses increase root exudation under fluctuating and continuous low light

(2017) Belinda C. Martin et al.   LIMNOLOGY AND OCEANOGRAPHY

Drivers of sulfide intrusion in Zostera muelleri in a moderately affected estuary in south-eastern Australia

(2017) Marianne Holmer et al.   MARINE AND FRESHWATER RESEARCH

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2017) David W. Waite et al.   Frontiers in Microbiology

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Motility of Electric Cable Bacteria

(2016) Jesper Tataru Bjerg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The impact of electrogenic sulfide oxidation on elemental cycling and solute fluxes in coastal sediment

(2016) Alexandra M.F. Rao et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Organic carbon in seagrass sediments is influenced by seagrass canopy complexity, turbidity, wave height, and water depth

(2016) Jimena Samper-Villarreal et al.   LIMNOLOGY AND OCEANOGRAPHY

A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema

(2016) Daniela Trojan et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments

(2015) Diana Vasquez-Cardenas et al.   ISME Journal

Rapid Redox Signal Transmission by “Cable Bacteria” beneath a Photosynthetic Biofilm

(2014) S. Y. Malkin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh

(2014) Elizabeth G. Wilbanks et al.   ENVIRONMENTAL MICROBIOLOGY

A split flow chamber with artificial sediment to examine the below-ground microenvironment of aquatic macrophytes

(2014) Kasper Elgetti Brodersen et al.   MARINE BIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Development of a ‘sediment-stress’ functional-level indicator for the seagrass Halophila ovalis

(2013) Kieryn Kilminster et al.   ECOLOGICAL INDICATORS

Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescencein situhybridization

(2013) Hannes Schmidt et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of organic acids on the formation of the barrier to radial oxygen loss in roots of Hordeum marinum

(2013) Lukasz Kotula et al.   FUNCTIONAL PLANT BIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The role of root exuded low molecular weight organic anions in facilitating petroleum hydrocarbon degradation: Current knowledge and future directions

(2013) Belinda C. Martin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Nutrient status of seagrasses cannot be inferred from system-scale distribution of phosphorus in Shark Bay, Western Australia

(2012) Matthew W. Fraser et al.   MARINE AND FRESHWATER RESEARCH

Filamentous bacteria transport electrons over centimetre distances

(2012) Christian Pfeffer et al.   NATURE

A Three-Stage Symbiosis Forms the Foundation of Seagrass Ecosystems

(2012) T. van der Heide et al.   SCIENCE

A novel gel-based technique for the high resolution, two-dimensional determination of iron (II) and sulfide in sediment

(2011) David Robertson et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

A simple and inexpensive high resolution color ratiometric planar optode imaging approach: application to oxygen and pH sensing.

(2011) Morten Larsen et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Thermodynamics and Kinetics of Sulfide Oxidation by Oxygen: A Look at Inorganically Controlled Reactions and Biologically Mediated Processes in the Environment

(2011) George W. Luther et al.   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Double Labeling of Oligonucleotide Probes for Fluorescence In Situ Hybridization (DOPE-FISH) Improves Signal Intensity and Increases rRNA Accessibility

(2009) K. Stoecker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities

(2008) Martin Mühling et al.   ISME Journal