Phylogeography of Atlantic Forest glassfrogs (Vitreorana): when geography, climate dynamics and rivers matter

Climatic suitability, isolation by distance and river resistance explain genetic variation in a Brazilian whiptail lizard

(2017) Eliana Faria Oliveira et al.   HEREDITY

Comparative landscape genetics of pond-breeding amphibians in Mediterranean temporal wetlands: The positive role of structural heterogeneity in promoting gene flow

(2017) Jorge Gutiérrez-Rodríguez et al.   MOLECULAR ECOLOGY

Meeting the challenge of DNA barcoding Neotropical amphibians: polymerase chain reaction optimization and new COI primers

(2017) Mariana L. Lyra et al.   Molecular Ecology Resources

Effects of Pleistocene climate changes on species ranges and evolutionary processes in the Neotropical Atlantic Forest

(2016) Gustavo S. Cabanne et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Environmental correlates of floristic regions and plant turnover in the Atlantic Forest hotspot

(2016) Felipe Zamborlini Saiter et al.   JOURNAL OF BIOGEOGRAPHY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

The “Atlantis Forest hypothesis” does not explain Atlantic Forest phylogeography

(2016) Fabio Raposo do Amaral et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neotropical forest expansion during the last glacial period challenges refuge hypothesis

(2016) Yuri L. R. Leite et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing the effect of palaeodrainages versus habitat stability on genetic divergence in riverine systems: study of a Neotropical fish of the Brazilian coastal Atlantic Forest

(2015) Andréa T. Thomaz et al.   JOURNAL OF BIOGEOGRAPHY

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

(2015) Joseph D. Manthey et al.   MOLECULAR ECOLOGY

Living on the edge: the role of geography and environment in structuring genetic variation in the southernmost populations of a tropical oak

(2015) J. Ortego et al.   PLANT BIOLOGY

DNA Barcoding Survey of Anurans across the Eastern Cordillera of Colombia and the Impact of the Andes on Cryptic Diversity

(2015) Carlos E. Guarnizo et al.   PLoS One

Adopting a spatially explicit perspective to study the mysterious fairy circles of Namibia

(2014) Stephan Getzin et al.   ECOGRAPHY

Barriers, rather than refugia, underlie the origin of diversity in toads endemic to the Brazilian Atlantic Forest

(2014) Maria Tereza C. Thomé et al.   MOLECULAR ECOLOGY

Molecular phylogeny, species limits, and biogeography of the Brazilian endemic lizard genus Enyalius (Squamata: Leiosauridae): An example of the historical relationship between Atlantic Forests and Amazonia

(2014) Miguel Trefaut Rodrigues et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Prediction of phylogeographic endemism in an environmentally complex biome

(2014) A. C. Carnaval et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity forMaxentecological niche models

(2014) Robert Muscarella et al.   Methods in Ecology and Evolution

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

EXAMINING THE FULL EFFECTS OF LANDSCAPE HETEROGENEITY ON SPATIAL GENETIC VARIATION: A MULTIPLE MATRIX REGRESSION APPROACH FOR QUANTIFYING GEOGRAPHIC AND ECOLOGICAL ISOLATION

(2013) Ian J. Wang   EVOLUTION

Neotropical diversification seen through glassfrogs

(2013) Santiago Castroviejo-Fisher et al.   JOURNAL OF BIOGEOGRAPHY

Multilocus tests of Pleistocene refugia and ancient divergence in a pair of Atlantic Forest antbirds (Myrmeciza)

(2013) Fábio Raposo do Amaral et al.   MOLECULAR ECOLOGY

Dismantling the Mantel tests

(2013) Gilles Guillot et al.   Methods in Ecology and Evolution

Quantifying the roles of ecology and geography in spatial genetic divergence

(2012) Ian J. Wang et al.   ECOLOGY LETTERS

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Historical biogeography of the Brazilian Atlantic forest and the Carnaval-Moritz model of Pleistocene refugia: what do phylogeographical studies tell us?

(2011) FELIPE DE MELLO MARTINS   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Rate variation and estimation of divergence times using strict and relaxed clocks

(2011) Richard P Brown et al.   BMC EVOLUTIONARY BIOLOGY

Testing the Rio Doce as a riverine barrier in shaping the Atlantic rainforest population divergence in the rodent Akodon cursor

(2011) Victor Hugo Colombi et al.   GENETICS AND MOLECULAR BIOLOGY

The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine

(2011) FERNANDO M. D’HORTA et al.   MOLECULAR ECOLOGY

Demographic processes in the montane Atlantic rainforest: Molecular and cytogenetic evidence from the endemic frog Proceratophrys boiei

(2011) Renata Cecília Amaro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years

(2011) C. C. Ribas et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

(2010) S T Kalinowski   HEREDITY

Comparative landscape genetics of two pond-breeding amphibian species in a highly modified agricultural landscape

(2010) C. S. GOLDBERG et al.   MOLECULAR ECOLOGY

Gene and species trees of a Neotropical group of treefrogs: Genetic diversification in the Brazilian Atlantic Forest and the origin of a polyploid species

(2010) Tuliana O. Brunes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest

(2010) Maria Tereza C. Thomé et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

The Brazilian Atlantic Forest: How much is left, and how is the remaining forest distributed? Implications for conservation

(2009) Milton Cezar Ribeiro et al.   BIOLOGICAL CONSERVATION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability

(2009) SARAH W. FITZPATRICK et al.   MOLECULAR ECOLOGY

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments

(2009) J-F. FLOT   Molecular Ecology Resources

High-latitude climate sensitivity to ice-sheet forcing over the last 120kyr

(2009) Joy S. Singarayer et al.   QUATERNARY SCIENCE REVIEWS

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

(2008) Jukka Corander et al.   BMC BIOINFORMATICS

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic forest

(2008) Ana Carolina Carnaval et al.   JOURNAL OF BIOGEOGRAPHY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY

Phylogenetic relationships of glassfrogs (Centrolenidae) based on mitochondrial and nuclear genes

(2008) Juan M. Guayasamin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): Biogeography and systematics implications

(2008) G CABANNE et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers

(2003) L. Lacey Knowles   MOLECULAR ECOLOGY