Particle methods to solve modelling problems in wound healing and tumor growth

Semi-stochastic cell-level computational modelling of cellular forces: application to contractures in burns and cyclic loading

(2015) F. J. Vermolen et al.   Biomechanics and Modeling in Mechanobiology

Cancer systems biology and modeling: Microscopic scale and multiscale approaches

(2015) Ali Masoudi-Nejad et al.   SEMINARS IN CANCER BIOLOGY

Modeling and controlling the two-phase dynamics of the p53 network: a Boolean network approach

(2014) Guo-Qiang Lin et al.   NEW JOURNAL OF PHYSICS

A Cell-Regulatory Mechanism Involving Feedback between Contraction and Tissue Formation Guides Wound Healing Progression

(2014) Clara Valero et al.   PLoS One

Directional Collective Cell Migration Emerges as a Property of Cell Interactions

(2014) Mae L. Woods et al.   PLoS One

A kinetic mechanism for cell sorting based on local variations in cell motility

(2014) C. Strandkvist et al.   Interface Focus

Mechanical Cell-Matrix Feedback Explains Pairwise and Collective Endothelial Cell Behavior In Vitro

(2014) René F. M. van Oers et al.   PLoS Computational Biology

Semi-stochastic cell-level computational modeling of the immune system response to bacterial infections and the effects of antibiotics

(2013) F. J. Vermolen et al.   Biomechanics and Modeling in Mechanobiology

Physical Explanation of Coupled Cell-Cell Rotational Behavior and Interfacial Morphology: A Particle Dynamics Model

(2013) Fong Yew Leong   BIOPHYSICAL JOURNAL

The moving grid finite element method applied to cell movement and deformation

(2013) Anotida Madzvamuse et al.   FINITE ELEMENTS IN ANALYSIS AND DESIGN

Tumour-stromal interactions generate emergent persistence in collective cancer cell migration

(2013) W. K. Chang et al.   Interface Focus

The Influence of Ischemic Factors on the Migration Rates of Cell Types Involved in Cutaneous and Subcutaneous Pressure Ulcers

(2012) Gil Topman et al.   ANNALS OF BIOMEDICAL ENGINEERING

A phenomenological model for chemico-mechanically induced cell shape changes during migration and cell–cell contacts

(2012) F. J. Vermolen et al.   Biomechanics and Modeling in Mechanobiology

A phenomenological approach to modelling collective cell movement in 2D

(2012) R. Rey et al.   Biomechanics and Modeling in Mechanobiology

Constructing Logical Models of Gene Regulatory Networks by Integrating Transcription Factor–DNA Interactions with Expression Data: An Entropy-Based Approach

(2012) Guy Karlebach et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A semi-stochastic cell-based model for in vitro infected ‘wound’ healing through motility reduction: A simulation study

(2012) F.J. Vermolen et al.   JOURNAL OF THEORETICAL BIOLOGY

Migration of cells in a social context

(2012) S. Vedel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mathematical modeling of solid cancer growth with angiogenesis

(2012) Hyun M Yang   Theoretical Biology and Medical Modelling

A semi-stochastic cell-based formalism to model the dynamics of migration of cells in colonies

(2011) F. J. Vermolen et al.   Biomechanics and Modeling in Mechanobiology

“Self-Assisted” Amoeboid Navigation in Complex Environments

(2011) Inbal Hecht et al.   PLoS One

Modeling Cell Movement and Chemotaxis Using Pseudopod-Based Feedback

(2011) M. P. Neilson et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING

Chemotaxis: A Feedback-Based Computational Model Robustly Predicts Multiple Aspects of Real Cell Behaviour

(2011) Matthew P. Neilson et al.   PLOS BIOLOGY

A cell-based simulation software for multi-cellular systems

(2010) Stefan Hoehme et al.   BIOINFORMATICS

A Predictive Model of Cell Traction Forces Based on Cell Geometry

(2010) Christopher A. Lemmon et al.   BIOPHYSICAL JOURNAL

Substrate Stiffness and Cell Area Predict Cellular Traction Stresses in Single Cells and Cells in Contact

(2010) Joseph P. Califano et al.   Cellular and Molecular Bioengineering

Computational investigation of intrinsic and extrinsic mechanisms underlying the formation of carcinoma

(2010) K. A. Rejniak et al.   MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA

In silico design of treatment strategies in wound healing and bone fracture healing

(2010) L. Geris et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration

(2010) S. Hoehme et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Numerical modeling of a mechano-chemical theory for wound contraction analysis

(2009) E. Javierre et al.   INTERNATIONAL JOURNAL OF SOLIDS AND STRUCTURES

Stochastic modelling of biased cell migration and collagen matrix modification

(2009) Andreas Groh et al.   JOURNAL OF MATHEMATICAL BIOLOGY

A mathematical model of wound healing and subsequent scarring

(2009) B. D. Cumming et al.   Journal of the Royal Society Interface

Modeling Morphogenesisin silicoandin vitro: Towards Quantitative, Predictive, Cell-based Modeling

(2009) R. M. H. Merks et al.   Mathematical Modelling of Natural Phenomena

Cell-Cell Mechanical Communication through Compliant Substrates

(2008) Cynthia A. Reinhart-King et al.   BIOPHYSICAL JOURNAL

A mathematical analysis of physiological and morphological aspects of wound closure

(2008) E. Javierre et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Individual-based and continuum models of growing cell populations: a comparison

(2008) Helen Byrne et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Nonlinear simulations of solid tumor growth using a mixture model: invasion and branching

(2008) Vittorio Cristini et al.   JOURNAL OF MATHEMATICAL BIOLOGY