The gut microbiome participates in transgenerational inheritance of low-temperature responses in Drosophila melanogaster

The Drosophila melanogaster Gut Microbiota Provisions Thiamine to Its Host

(2018) David R. Sannino et al.   mBio

The effect of gut microbiota elimination in Drosophila melanogaster : A how-to guide for host-microbiota studies

(2018) Chloe Heys et al.   Ecology and Evolution

A Matter of Time: Small RNAs Regulate the Duration of Epigenetic Inheritance

(2017) Leah Houri-Zeevi et al.   TRENDS IN GENETICS

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

(2017) Dae-Wook Kang et al.   Microbiome

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

(2016) Heath A. MacMillan et al.   Scientific Reports

Update on Fecal Microbiota Transplantation 2015: Indications, Methodologies, Mechanisms, and Outlook

(2015) Colleen R. Kelly et al.   GASTROENTEROLOGY

Weight Gain After Fecal Microbiota Transplantation

(2015) N. Alang et al.   Open Forum Infectious Diseases

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Environmental stress and epigenetic transgenerational inheritance

(2014) Michael K Skinner   BMC Medicine

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Starvation-Induced Transgenerational Inheritance of Small RNAs in C. elegans

(2014) Oded Rechavi et al.   CELL

The Gut Microbiome in Health and Disease

(2014) Chung Owyang et al.   GASTROENTEROLOGY

Potential roles of noncoding RNAs in environmental epigenetic transgenerational inheritance

(2014) Wei Yan   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Delayed development induced by toxicity to the host can be inherited by a bacterial-dependent, transgenerational effect

(2014) Yael Fridmann-Sirkis et al.   Frontiers in Genetics

Host Species and Environmental Effects on Bacterial Communities Associated with Drosophila in the Laboratory and in the Natural Environment

(2013) Fabian Staubach et al.   PLoS One

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster

(2012) S. W. Robinson et al.   NUCLEIC ACIDS RESEARCH

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Transgenerational inheritance of stress pathology

(2011) Stephen G. Matthews et al.   EXPERIMENTAL NEUROLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Maternal High-Fat Diet Promotes Body Length Increases and Insulin Insensitivity in Second-Generation Mice

(2009) Gregory A. Dunn et al.   ENDOCRINOLOGY

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS