Neutral mechanisms and niche differentiation in steady-state insular microbial communities revealed by single cell analysis

Experimental insights into the importance of ecologically dissimilar bacteria to community assembly along a salinity gradient

(2018) Dandan Shen et al.   ENVIRONMENTAL MICROBIOLOGY

Personalized microbiome dynamics – Cytometric fingerprints for routine diagnostics

(2018) Christin Koch et al.   MOLECULAR ASPECTS OF MEDICINE

The human skin microbiome

(2018) Allyson L. Byrd et al.   NATURE REVIEWS MICROBIOLOGY

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

(2018) Zishu Liu et al.   mSphere

Individual-Based Modelling of Invasion in Bioaugmented Sand Filter Communities

(2018) Aisling Daly et al.   Processes

Assembly of microbial communities in replicate nutrient-cycling model ecosystems follows divergent trajectories, leading to alternate stable states

(2017) Eulyn Pagaling et al.   ENVIRONMENTAL MICROBIOLOGY

Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population-specific feeding rates by invasive dreissenid mussels

(2017) Ruben Props et al.   ENVIRONMENTAL MICROBIOLOGY

Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks

(2017) Eduardo Pérez-Valera et al.   ENVIRONMENTAL MICROBIOLOGY

Growth-independent cross-feeding modifies boundaries for coexistence in a bacterial mutualism

(2017) Alexandra L. McCully et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet

(2017) Hannes Peter et al.   ISME Journal

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

(2017) Benjamin J Tully et al.   ISME Journal

Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence

(2017) Johannes Lambrecht et al.   Microbial Cell Factories

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biofilm community succession: a neutral perspective

(2017) Stephen Woodcock et al.   MICROBIOLOGY-SGM

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure

(2017) Jo De Vrieze et al.   WATER RESEARCH

Microbial community shift in a suspended stuffing biological reactor with pre-attached aerobic denitrifier

(2017) Cong Du et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Long-term genomic coevolution of host-parasite interaction in the natural environment

(2017) Elina Laanto et al.   Nature Communications

Effect of experimental soil disturbance and recovery on structure and function of soil community: a metagenomic and metagenetic approach

(2017) Soobeom Choi et al.   Scientific Reports

Microbial acid fermentation products

(2017) Lawrence P. Wackett   Microbial Biotechnology

Community structure follows simple assembly rules in microbial microcosms

(2017) Jonathan Friedman et al.   Nature Ecology & Evolution

Correlating microbial community compositions with environmental factors in activated sludge from four full-scale municipal wastewater treatment plants in Shanghai, China

(2016) Pin Gao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity

(2016) Melanie Schirmer et al.   CELL

Species-sorting and mass-transfer paradigms control managed natural metacommunities

(2016) Susanne Günther et al.   ENVIRONMENTAL MICROBIOLOGY

High-resolution microbiota flow cytometry reveals dynamic colitis-associated changes in fecal bacterial composition

(2016) Jakob Zimmermann et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Regional synchrony in full-scale activated sludge bioreactors due to deterministic microbial community assembly

(2016) James S Griffin et al.   ISME Journal

Absolute quantification of microbial taxon abundances

(2016) Ruben Props et al.   ISME Journal

Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes

(2016) Elizabeth L. Johnson et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Mechanisms of inflammation-driven bacterial dysbiosis in the gut

(2016) M Y Zeng et al.   Mucosal Immunology

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measuring the biodiversity of microbial communities by flow cytometry

(2016) Ruben Props et al.   Methods in Ecology and Evolution

Next generation sequencing data of a defined microbial mock community

(2016) Esther Singer et al.   Scientific Data

Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom

(2016) David M. Needham et al.   Nature Microbiology

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters

(2015) Inka Vanwonterghem et al.   Scientific Reports

The shape of terrestrial abundance distributions

(2015) J. Alroy   Science Advances

Multiple micro-predators controlling bacterial communities in the environment

(2014) Julia Johnke et al.   CURRENT OPINION IN BIOTECHNOLOGY

Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics

(2014) Christin Koch et al.   Frontiers in Microbiology

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function

(2013) Christin Koch et al.   Nature Protocols

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

(2013) J. Zhou et al.   mBio

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Determining environmental causes of biological effects: the need for a mechanistic physiological dimension in conservation biology

(2012) F. Seebacher et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Correlation of Community Dynamics and Process Parameters As a Tool for the Prediction of the Stability of Wastewater Treatment

(2011) Susanne Günther et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

(2010) Justin Kuczynski et al.   NATURE METHODS

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Stochastic models of population extinction

(2010) Otso Ovaskainen et al.   TRENDS IN ECOLOGY & EVOLUTION

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA