标题
Tools and resources for metabolomics research community: A 2017-2018 update
作者
关键词
-
出版物
ELECTROPHORESIS
Volume 40, Issue 2, Pages 227-246
出版商
Wiley
发表日期
2018-11-16
DOI
10.1002/elps.201800428
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- MetExpert: An expert system to enhance gas chromatography‒mass spectrometry-based metabolite identifications
- (2018) Feng Qiu et al. ANALYTICA CHIMICA ACTA
- Application of ensemble deep neural network to metabolomics studies
- (2018) Taiga Asakura et al. ANALYTICA CHIMICA ACTA
- Current and future perspectives of functional metabolomics in disease studies–A review
- (2018) Min Yan et al. ANALYTICA CHIMICA ACTA
- MassImager: A software for interactive and in-depth analysis of mass spectrometry imaging data
- (2018) Jiuming He et al. ANALYTICA CHIMICA ACTA
- Modern data science for analytical chemical data – A comprehensive review
- (2018) Ewa Szymańska ANALYTICA CHIMICA ACTA
- Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection
- (2018) Zhucui Li et al. ANALYTICA CHIMICA ACTA
- A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database
- (2018) Naama Karu et al. ANALYTICA CHIMICA ACTA
- MCEE: a data preprocessing approach for metabolic confounding effect elimination
- (2018) Yitao Li et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Application of a Deep Neural Network to Metabolomics Studies and Its Performance in Determining Important Variables
- (2018) Yasuhiro Date et al. ANALYTICAL CHEMISTRY
- LipSpin: A New Bioinformatics Tool for Quantitative 1H NMR Lipid Profiling
- (2018) Rubén Barrilero et al. ANALYTICAL CHEMISTRY
- Best-Matched Internal Standard Normalization in Liquid Chromatography–Mass Spectrometry Metabolomics Applied to Environmental Samples
- (2018) Angela K. Boysen et al. ANALYTICAL CHEMISTRY
- Expanding the Coverage of the Metabolome with Nitrogen-Based NMR
- (2018) Fatema Bhinderwala et al. ANALYTICAL CHEMISTRY
- High-Performance Chemical Isotope Labeling Liquid Chromatography Mass Spectrometry for Exosome Metabolomics
- (2018) Xian Luo et al. ANALYTICAL CHEMISTRY
- Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology
- (2018) Tao Huan et al. ANALYTICAL CHEMISTRY
- Isotope Labeling-Assisted Evaluation of Hydrophilic and Hydrophobic Liquid Chromatograph–Mass Spectrometry for Metabolomics Profiling
- (2018) Boer Xie et al. ANALYTICAL CHEMISTRY
- Comprehensive Strategy to Construct In-House Database for Accurate and Batch Identification of Small Molecular Metabolites
- (2018) Xinjie Zhao et al. ANALYTICAL CHEMISTRY
- AQuA: An Automated Quantification Algorithm for High-Throughput NMR-Based Metabolomics and Its Application in Human Plasma
- (2018) Hanna E. Röhnisch et al. ANALYTICAL CHEMISTRY
- METLIN: A Technology Platform for Identifying Knowns and Unknowns
- (2018) Carlos Guijas et al. ANALYTICAL CHEMISTRY
- Applications of mass spectrometry-based targeted and non-targeted lipidomics
- (2018) Hyeon-Cheol Lee et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- LipidPedia: a comprehensive lipid knowledgebase
- (2018) Tien-Chueh Kuo et al. BIOINFORMATICS
- Network-based integration of multi-omics data for prioritizing cancer genes
- (2018) Christos Dimitrakopoulos et al. BIOINFORMATICS
- GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization
- (2018) Sudhir Ghandikota et al. BIOINFORMATICS
- MetaboCraft: building a Minecraft plugin for metabolomics
- (2018) Anargyros Megalios et al. BIOINFORMATICS
- MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites
- (2018) Samuel J Hinshaw et al. BIOINFORMATICS
- ChemDistiller: an engine for metabolite annotation in mass spectrometry
- (2018) Ivan Laponogov et al. BIOINFORMATICS
- MetaboDiff: an R package for differential metabolomic analysis
- (2018) Andreas Mock et al. BIOINFORMATICS
- SimExTargId: a comprehensive package for real-time LC-MS data acquisition and analysis
- (2018) William M B Edmands et al. BIOINFORMATICS
- nVenn: generalized, quasi-proportional Venn and Euler diagrams
- (2018) José G Pérez-Silva et al. BIOINFORMATICS
- Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints
- (2018) Marcus Ludwig et al. BIOINFORMATICS
- SECIMTools: a suite of metabolomics data analysis tools
- (2018) Alexander S. Kirpich et al. BMC BIOINFORMATICS
- IntLIM: integration using linear models of metabolomics and gene expression data
- (2018) Jalal K. Siddiqui et al. BMC BIOINFORMATICS
- Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data
- (2018) Anna Marco-Ramell et al. BMC BIOINFORMATICS
- Metabolomics and Isotope Tracing
- (2018) Cholsoon Jang et al. CELL
- Improving metabolome coverage and data quality: advancing metabolomics and lipidomics for biomarker discovery
- (2018) Dajana Vuckovic CHEMICAL COMMUNICATIONS
- Cardiovascular Metabolomics
- (2018) Robert W. McGarrah et al. CIRCULATION RESEARCH
- Preanalytical Processing and Biobanking Procedures of Biological Samples for Metabolomics Research: A White Paper, Community Perspective (for “Precision Medicine and Pharmacometabolomics Task Group”—The Metabolomics Society Initiative)
- (2018) Jennifer A. Kirwan et al. CLINICAL CHEMISTRY
- Metabolomics assisted metabolic network modeling and network wide analysis of metabolites in microbiology
- (2018) Junhua Wang et al. CRITICAL REVIEWS IN BIOTECHNOLOGY
- Advances in computational metabolomics and databases deepen the understanding of metabolisms
- (2018) Hiroshi Tsugawa CURRENT OPINION IN BIOTECHNOLOGY
- The potential of ion mobility–mass spectrometry for non-targeted metabolomics
- (2018) Teresa Mairinger et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- The potential of Ion Mobility Mass Spectrometry for high-throughput and high-resolution lipidomics
- (2018) Christine Hinz et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- ROMANCE: A new software tool to improve data robustness and feature identification in CE-MS metabolomics
- (2018) Víctor González-Ruiz et al. ELECTROPHORESIS
- New tools and resources in metabolomics: 2016-2017
- (2018) Biswapriya B. Misra ELECTROPHORESIS
- A review of validated biomarkers obtained through metabolomics
- (2018) Ángeles López-López et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- CypReact: A Software Tool for in Silico Reactant Prediction for Human Cytochrome P450 Enzymes
- (2018) Siyang Tian et al. Journal of Chemical Information and Modeling
- Promises and pitfalls of untargeted metabolomics
- (2018) Ilya Gertsman et al. JOURNAL OF INHERITED METABOLIC DISEASE
- Quality assurance procedures for mass spectrometry untargeted metabolomics. a review
- (2018) Danuta Dudzik et al. JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS
- Knowledge-based metabolite annotation tool: CEU Mass Mediator
- (2018) Alberto Gil de la Fuente et al. JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS
- rDolphin: a GUI R package for proficient automatic profiling of 1D 1H-NMR spectra of study datasets
- (2018) Daniel Cañueto et al. Metabolomics
- Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies
- (2018) David Broadhurst et al. Metabolomics
- KniMet: a pipeline for the processing of chromatography–mass spectrometry metabolomics data
- (2018) Sonia Liggi et al. Metabolomics
- Van Krevelen diagram visualization of high resolution-mass spectrometry metabolomics data with OpenVanKrevelen
- (2018) Stephen A. Brockman et al. Metabolomics
- TarMet: a reactive GUI tool for efficient and confident quantification of MS based targeted metabolic and stable isotope tracer analysis
- (2018) Hongchao Ji et al. Metabolomics
- DeltaMS: a tool to track isotopologues in GC- and LC-MS data
- (2018) Tim U. H. Baumeister et al. Metabolomics
- NormalizeMets: assessing, selecting and implementing statistical methods for normalizing metabolomics data
- (2018) Alysha M. De Livera et al. Metabolomics
- A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository
- (2018) Andrey Smelter et al. Metabolomics
- Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra
- (2018) John D. Hogan et al. MOLECULAR & CELLULAR PROTEOMICS
- Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
- (2018) Ricard Argelaguet et al. Molecular Systems Biology
- SistematX, an Online Web-Based Cheminformatics Tool for Data Management of Secondary Metabolites
- (2018) Marcus Scotti et al. MOLECULES
- Metabolomics activity screening for identifying metabolites that modulate phenotype
- (2018) Carlos Guijas et al. NATURE BIOTECHNOLOGY
- PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data
- (2018) Rafael Hernández-de-Diego et al. NUCLEIC ACIDS RESEARCH
- MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
- (2018) Jasmine Chong et al. NUCLEIC ACIDS RESEARCH
- Principal component analysis of normalized full spectrum mass spectrometry data in multiMS-toolbox: An effective tool to identify important factors for classification of different metabolic patterns and bacterial strains
- (2018) Pavel Cejnar et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Propagating annotations of molecular networks using in silico fragmentation
- (2018) Ricardo R. da Silva et al. PLoS Computational Biology
- speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification
- (2018) Charlie Beirnaert et al. PLoS Computational Biology
- GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies
- (2018) Runmin Wei et al. PLoS Computational Biology
- Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope Labeling
- (2018) Qiuying Pang et al. Frontiers in Plant Science
- FluxPyt: a Python-based free and open-source software for 13C-metabolic flux analyses
- (2018) Trunil S. Desai et al. PeerJ
- LipiDex: An Integrated Software Package for High-Confidence Lipid Identification
- (2018) Paul D. Hutchins et al. Cell Systems
- A Landscape of Metabolic Variation across Tumor Types
- (2018) Ed Reznik et al. Cell Systems
- statTarget: A streamlined tool for signal drift correction and interpretations of quantitative mass spectrometry-based omics data
- (2018) Hemi Luan et al. ANALYTICA CHIMICA ACTA
- MetaboGroupS: A Group Entropy-Based Web Platform for Evaluating Normalization Methods in Blood Metabolomics Data from Maintenance Hemodialysis Patients
- (2018) Shisheng Wang et al. ANALYTICAL CHEMISTRY
- Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
- (2018) Suzanne M. Kosina et al. BMC MICROBIOLOGY
- eicCluster software, an open-source in silico tool and on-surface syntheses, an in situ concept, both exploited for signal highlighting in high-resolution mass spectrometry to ease structure elucidation in planar chromatography
- (2018) Dimitri Fichou et al. JOURNAL OF CHROMATOGRAPHY A
- MS-based lipidomics of human blood plasma - a community-initiated position paper to develop accepted guidelines
- (2018) Bo Burla et al. JOURNAL OF LIPID RESEARCH
- Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies
- (2018) Kieu Trinh Do et al. Metabolomics
- XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules
- (2018) Xavier Domingo-Almenara et al. NATURE METHODS
- Dereplication of microbial metabolites through database search of mass spectra
- (2018) Hosein Mohimani et al. Nature Communications
- Instant Clue: A Software Suite for Interactive Data Visualization and Analysis
- (2018) Hendrik Nolte et al. Scientific Reports
- Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics
- (2018) Romanas Chaleckis et al. CURRENT OPINION IN BIOTECHNOLOGY
- Clustering of MS 2 spectra using unsupervised methods to aid the identification of secondary metabolites from Pseudomonas aeruginosa
- (2017) Tobias Depke et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses
- (2017) Mark T. Bokhart et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Critical review of reporting of the data analysis step in metabolomics
- (2017) E. C. Considine et al. Metabolomics
- A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it
- (2017) Rachel A. Spicer et al. Metabolomics
- Navigating freely-available software tools for metabolomics analysis
- (2017) Rachel Spicer et al. Metabolomics
- 3D molecular cartography using LC–MS facilitated by Optimus and 'ili software
- (2017) Ivan Protsyuk et al. Nature Protocols
- jMorp: Japanese Multi Omics Reference Panel
- (2017) Shu Tadaka et al. NUCLEIC ACIDS RESEARCH
- Significance estimation for large scale metabolomics annotations by spectral matching
- (2017) Kerstin Scheubert et al. Nature Communications
- RRmix: A method for simultaneous batch effect correction and analysis of metabolomics data in the absence of internal standards
- (2017) Stephen Salerno et al. PLoS One
- NuBBEDB: an updated database to uncover chemical and biological information from Brazilian biodiversity
- (2017) Alan C. Pilon et al. Scientific Reports
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- Updates in metabolomics tools and resources: 2014-2015
- (2015) Biswapriya B. Misra et al. ELECTROPHORESIS
- Development of a GC/Quadrupole-Orbitrap Mass Spectrometer, Part II: New Approaches for Discovery Metabolomics
- (2014) Amelia C. Peterson et al. ANALYTICAL CHEMISTRY
- Development of a GC/Quadrupole-Orbitrap Mass Spectrometer, Part I: Design and Characterization
- (2014) Amelia C. Peterson et al. ANALYTICAL CHEMISTRY
- MGV: a generic graph viewer for comparative omics data
- (2011) Stephan Symons et al. BIOINFORMATICS
- Development and Characterization of a GC-Enabled QLT-Orbitrap for High-Resolution and High-Mass Accuracy GC/MS
- (2010) Amelia C. Peterson et al. ANALYTICAL CHEMISTRY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation