Transcriptionally dynamic progenitor populations organised around a stable niche drive axial patterning

Oct4 Is a Key Regulator of Vertebrate Trunk Length Diversity

(2016) Rita Aires et al.   DEVELOPMENTAL CELL

Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos

(2016) Roel Neijts et al.   GENES & DEVELOPMENT

Resolving early mesoderm diversification through single-cell expression profiling

(2016) Antonio Scialdone et al.   NATURE

Somatic activating mutations in Pik3ca cause sporadic venous malformations in mice and humans

(2016) Sandra D. Castillo et al.   Science Translational Medicine

Cdx and T Brachyury Co-activate Growth Signaling in the Embryonic Axial Progenitor Niche

(2016) Shilu Amin et al.   Cell Reports

Position-dependent plasticity of distinct progenitor types in the primitive streak

(2016) Filip J Wymeersch et al.   eLife

β-Catenin Regulates Primitive Streak Induction through Collaborative Interactions with SMAD2/SMAD3 and OCT4

(2015) Nina S. Funa et al.   Cell Stem Cell

Neuromesodermal progenitors and the making of the spinal cord

(2015) D. Henrique et al.   DEVELOPMENT

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Hox genes control vertebrate body elongation by collinear Wnt repression

(2015) Nicolas Denans et al.   eLife

Methods for Precisely Localized Transfer of Cells or DNA into Early Postimplantation Mouse Embryos

(2015) Yali Huang et al.   Jove-Journal of Visualized Experiments

Deterministic HOX Patterning in Human Pluripotent Stem Cell-Derived Neuroectoderm

(2015) Ethan S. Lippmann et al.   Stem Cell Reports

Distinct Wnt-driven primitive streak-like populations reflect in vivo lineage precursors

(2014) A. Tsakiridis et al.   DEVELOPMENT

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo

(2014) I. Olivera-Martinez et al.   DEVELOPMENT

Redefining the In Vivo Origin of Metanephric Nephron Progenitors Enables Generation of Complex Kidney Structures from Pluripotent Stem Cells

(2013) Atsuhiro Taguchi et al.   Cell Stem Cell

Functional evaluation of ES cell-derived endodermal populations reveals differences between Nodal and Activin A-guided differentiation

(2013) A. E. Chen et al.   DEVELOPMENT

Switching Axial Progenitors from Producing Trunk to Tail Tissues in Vertebrate Embryos

(2013) Arnon Dias Jurberg et al.   DEVELOPMENTAL CELL

Bone morphogenic protein signalling suppresses differentiation of pluripotent cells by maintaining expression of E-Cadherin

(2013) Mattias Malaguti et al.   eLife

Transcriptional regulatory networks in epiblast cells and during anterior neural plate development as modeled in epiblast stem cells

(2012) M. Iwafuchi-Doi et al.   DEVELOPMENT

Recruitment of 5' Hoxa genes in the allantois is essential for proper extra-embryonic function in placental mammals

(2012) M. Scotti et al.   DEVELOPMENT

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

In Vivo Differentiation Potential of Epiblast Stem Cells Revealed by Chimeric Embryo Formation

(2012) Yali Huang et al.   Cell Reports

Loss of FGF-Dependent Mesoderm Identity and Rise of Endogenous Retinoid Signalling Determine Cessation of Body Axis Elongation

(2012) Isabel Olivera-Martinez et al.   PLOS BIOLOGY

Clonal and molecular analysis of the prospective anterior neural boundary in the mouse embryo

(2011) M. Cajal et al.   DEVELOPMENT

Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord

(2011) Owen J. Tamplin et al.   DEVELOPMENTAL BIOLOGY

Identity and fate of Tbx4-expressing cells reveal developmental cell fate decisions in the allantois, limb, and external genitalia

(2011) L.A. Naiche et al.   DEVELOPMENTAL DYNAMICS

Tbx6-dependent Sox2 regulation determines neural or mesodermal fate in axial stem cells

(2011) Tatsuya Takemoto et al.   NATURE

The transcriptional and signalling networks of pluripotency

(2011) Huck-Hui Ng et al.   NATURE CELL BIOLOGY

Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods

(2011) Chao Chen et al.   PLoS One

Cdx mutant axial progenitor cells are rescued by grafting to a wild type environment

(2010) Monika Bialecka et al.   DEVELOPMENTAL BIOLOGY

Hox genes and regional patterning of the vertebrate body plan

(2010) Moises Mallo et al.   DEVELOPMENTAL BIOLOGY

Brachyury establishes the embryonic mesodermal progenitor niche

(2010) B. L. Martin et al.   GENES & DEVELOPMENT

Stem cells, signals and vertebrate body axis extension

(2009) V. Wilson et al.   DEVELOPMENT

Modularity, comparative embryology and evo-devo: Developmental dissection of evolving body plans

(2009) Shigeru Kuratani   DEVELOPMENTAL BIOLOGY

Redefining the Progression of Lineage Segregations during Mammalian Embryogenesis by Clonal Analysis

(2009) Elena Tzouanacou et al.   DEVELOPMENTAL CELL

Cdx and Hox Genes Differentially Regulate Posterior Axial Growth in Mammalian Embryos

(2009) Teddy Young et al.   DEVELOPMENTAL CELL

Review: Time–space translation regulates trunk axial patterning in the early vertebrate embryo

(2009) A.J. Durston et al.   GENOMICS

The road to the vertebral formula

(2009) Moises Mallo et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Wnt signaling maintains the notochord fate for progenitor cells and supports the posterior extension of the notochord

(2009) Kanako Ukita et al.   MECHANISMS OF DEVELOPMENT

Making a commitment: cell lineage allocation and axis patterning in the early mouse embryo

(2009) Sebastian J. Arnold et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Epigenetic Temporal Control of Mouse Hox Genes in Vivo

(2009) N. Soshnikova et al.   SCIENCE

Uncoupling Time and Space in the Collinear Regulation of Hox Genes

(2009) Patrick Tschopp et al.   PLoS Genetics

lumi: a pipeline for processing Illumina microarray

(2008) P. Du et al.   BIOINFORMATICS

Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives

(2008) Owen J Tamplin et al.   BMC GENOMICS

Localised axial progenitor cell populations in the avian tail bud are not committed to a posterior Hox identity

(2008) M. J. McGrew et al.   DEVELOPMENT

VACTERL/caudal regression/Currarino syndrome-like malformations in mice with mutation in the proprotein convertase Pcsk5

(2008) D. Szumska et al.   GENES & DEVELOPMENT

Control of segment number in vertebrate embryos

(2008) Céline Gomez et al.   NATURE