A unified solution for different scenarios of predicting drug-target interactions via triple matrix factorization

Predicting and understanding comprehensive drug-drug interactions via semi-nonnegative matrix factorization

(2018) Hui Yu et al.   BMC Systems Biology

An Integrated Local Classification Model of Predicting Drug-Drug Interactions via Dempster-Shafer Theory of Evidence

(2018) Jian-Yu Shi et al.   Scientific Reports

Predicting existing targets for new drugs base on strategies for missing interactions

(2016) Jian-Yu Shi et al.   BMC BIOINFORMATICS

Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction

(2016) Yong Liu et al.   PLoS Computational Biology

Predicting target-ligand interactions using protein ligand-binding site and ligand substructures

(2015) Caihua Wang et al.   BMC Systems Biology

Predicting drug–target interaction for new drugs using enhanced similarity measures and super-target clustering

(2015) Jian-Yu Shi et al.   METHODS

Optimizing drug–target interaction prediction based on random walk on heterogeneous networks

(2015) Abhik Seal et al.   Journal of Cheminformatics

Toward more realistic drug-target interaction predictions

(2014) T. Pahikkala et al.   BRIEFINGS IN BIOINFORMATICS

Genenames.org: the HGNC resources in 2015

(2014) Kristian A. Gray et al.   NUCLEIC ACIDS RESEARCH

Local motifs involved in the canonical structure of the ligand-binding domain in the nuclear receptor superfamily

(2013) Motonori Tsuji   JOURNAL OF STRUCTURAL BIOLOGY

PubChem BioAssay: 2014 update

(2013) Yanli Wang et al.   NUCLEIC ACIDS RESEARCH

Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile

(2013) Twan van Laarhoven et al.   PLoS One

Predicting drug-target interactions from chemical and genomic kernels using Bayesian matrix factorization

(2012) M. Gonen   BIOINFORMATICS

Drug–target interaction prediction by random walk on the heterogeneous network

(2012) Xing Chen et al.   Molecular BioSystems

Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference

(2012) Feixiong Cheng et al.   PLoS Computational Biology

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Mining small-molecule screens to repurpose drugs

(2011) S. J. Swamidass   BRIEFINGS IN BIOINFORMATICS

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

(2010) Zheng Xia et al.   BMC Systems Biology

Supervised prediction of drug–target interactions using bipartite local models

(2009) Kevin Bleakley et al.   BIOINFORMATICS

Predicting promiscuity

(2009) Andrew L. Hopkins   NATURE

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces

(2008) Y. Yamanishi et al.   BIOINFORMATICS