A western Sahara centre of domestication inferred from pearl millet genomes

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

(2017) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences

(2017) Philippe Cubry et al.   Frontiers in Genetics

Borrowed alleles and convergence in serpentine adaptation

(2016) Brian J. Arnold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy

(2016) Cécile Berthouly-Salazar et al.   Frontiers in Plant Science

Inference of domestication history and differentiation between early- and late-flowering varieties in pearl millet

(2015) Y. Dussert et al.   MOLECULAR ECOLOGY

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing

(2015) Huashui Ai et al.   NATURE GENETICS

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

A question of timing: spatio-temporal structure and mechanisms of early agriculture expansion in West Africa

(2014) Sylvain Ozainne et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination

(2010) Nicolas Ray et al.   BIOINFORMATICS

4500-Year old domesticated pearl millet (Pennisetum glaucum) from the Tilemsi Valley, Mali: new insights into an alternative cereal domestication pathway

(2010) Katie Manning et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Climate-Driven Ecosystem Succession in the Sahara: The Past 6000 Years

(2008) S. Kro pelin et al.   SCIENCE

Phylogeny and origin of pearl millet (Pennisetum glaucum [L.] R. Br) as revealed by microsatellite loci

(2008) Ibrahima Oumar et al.   THEORETICAL AND APPLIED GENETICS