Rhizoremediation of petroleum hydrocarbons: a model system for plant microbiome manipulation

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome

(2018) Etienne Yergeau et al.   ISME Journal

Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination

(2018) E. Gonzalez et al.   Microbiome

Hydrocarbon degradation potential and plant growth-promoting activity of culturable endophytic bacteria of Lotus corniculatus and Oenothera biennis from a long-term polluted site

(2017) Małgorzata Pawlik et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Bacteria from wheat and cucurbit plant roots metabolize PAHs and aromatic root exudates: Implications for rhizodegradation

(2017) Cairn S. Ely et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by fungal enzymes: A review

(2017) Tayssir Kadri et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Phytoremediation of Light Crude Oil by Maize (Zea mays L.) Bio-Augmented with Plant Growth Promoting Bacteria

(2017) Hafiz Naeem Asghar et al.   SOIL & SEDIMENT CONTAMINATION

Microbial mechanisms controlling the rhizosphere effect of ryegrass on degradation of polycyclic aromatic hydrocarbons in an aged-contaminated agricultural soil

(2017) Meixia Guo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mechanisms of action of plant growth promoting bacteria

(2017) Oluwaseyi Samuel Olanrewaju et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Petroleum Contamination and Plant Identity Influence Soil and Root Microbial Communities While AMF Spores Retrieved from the Same Plants Possess Markedly Different Communities

(2017) Bachir Iffis et al.   Frontiers in Plant Science

Soil and brownfield bioremediation

(2017) Mallavarapu Megharaj et al.   Microbial Biotechnology

A Diverse Soil Microbiome Degrades More Crude Oil than Specialized Bacterial Assemblages Obtained in Culture

(2016) Terrence H. Bell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Principles for designing synthetic microbial communities

(2016) Nathan I Johns et al.   CURRENT OPINION IN MICROBIOLOGY

Petroleum hydrocarbon contamination, plant identity and arbuscular mycorrhizal fungal (AMF) community determine assemblages of the AMF spore-associated microbes

(2016) Bachir Iffis et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in Polycyclic Aromatic Hydrocarbons (PAHs) and Soil Biological Parameters in a Revegetated Coal Mine Spoil

(2016) Sangeeta Mukhopadhyay et al.   LAND DEGRADATION & DEVELOPMENT

Effects of Inoculum Density on Plant Growth and Hydrocarbon Degradation

(2016) Ghulam SHABIR et al.   PEDOSPHERE

Changes in the Bacterial Community Structure of Remediated Anthracene-Contaminated Soils

(2016) Laura Delgado-Balbuena et al.   PLoS One

Bacterial Communities: Interactions to Scale

(2016) Reed M. Stubbendieck et al.   Frontiers in Microbiology

Short-Term Rhizosphere Effect on Available Carbon Sources, Phenanthrene Degradation, and Active Microbiome in an Aged-Contaminated Industrial Soil

(2016) François Thomas et al.   Frontiers in Microbiology

Bacterial Endophytes Isolated from Plants in Natural Oil Seep Soils with Chronic Hydrocarbon Contamination

(2016) Rhea Lumactud et al.   Frontiers in Microbiology

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

(2016) Kevin R. Theis et al.   mSystems

Next generation of microbial inoculants for agriculture and bioremediation

(2016) Antonino Baez-Rogelio et al.   Microbial Biotechnology

Root Exudation: The Ecological Driver of Hydrocarbon Rhizoremediation

(2016) Fanny Rohrbacher et al.   Agronomy-Basel

Microbial Community Composition, Functions, and Activities in the Gulf of Mexico 1 Year after the Deepwater Horizon Accident

(2015) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill

(2015) Terrence H. Bell et al.   ENVIRONMENTAL MICROBIOLOGY

“Omics” Insights into PAH Degradation toward Improved Green Remediation Biotechnologies

(2015) Abdelhak El Amrani et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Rethinking heritability of the microbiome

(2015) Edward J. van Opstal et al.   SCIENCE

Genotypic differences explain most of the response of willow cultivars to petroleum-contaminated soil

(2015) Vanessa Grenier et al.   TREES-STRUCTURE AND FUNCTION

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Pawnobiome: manipulation of the hologenome within one host generation and beyond

(2015) Jameson D. Voss et al.   Frontiers in Microbiology

Transplanting Soil Microbiomes Leads to Lasting Effects on Willow Growth, but not on the Rhizosphere Microbiome

(2015) Etienne Yergeau et al.   Frontiers in Microbiology

Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering

(2015) Liliana Quiza et al.   Frontiers in Plant Science

Effect of Rhizosphere Enzymes on Phytoremediation in PAH-Contaminated Soil Using Five Plant Species

(2015) Rui Liu et al.   PLoS One

Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons

(2015) Antoine P. Pagé et al.   PLoS One

The role of mycorrhizae and plant growth promoting rhizobacteria (PGPR) in improving crop productivity under stressful environments

(2014) Sajid Mahmood Nadeem et al.   BIOTECHNOLOGY ADVANCES

Fungal endophyte colonization coincides with altered DNA methylation in drought-stressed wheat seedlings

(2014) Michelle Hubbard et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Isolation and characterization of plant growth-promoting rhizobacteria and their effects on phytoremediation of petroleum-contaminated saline-alkali soil

(2014) Wuxing Liu et al.   CHEMOSPHERE

Remediation of polychlorinated biphenyl-contaminated soil by using a combination of ryegrass, arbuscular mycorrhizal fungi and earthworms

(2014) Yan-Fei Lu et al.   CHEMOSPHERE

Degradation, Phytoprotection and Phytoremediation of Phenanthrene by Endophyte Pseudomonas putida, PD1

(2014) Zareen Khan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Effect of plant growth-promoting bacteria (PGPR) and arbuscular mycorrhizal fungi (AMF) inoculation on oats in saline-alkali soil contaminated by petroleum to enhance phytoremediation

(2014) Feifei Xun et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Agricultural uses of plant biostimulants

(2014) Pamela Calvo et al.   PLANT AND SOIL

Contrasting the Community Structure of Arbuscular Mycorrhizal Fungi from Hydrocarbon-Contaminated and Uncontaminated Soils following Willow (Salix spp. L.) Planting

(2014) Saad El-Din Hassan et al.   PLoS One

Increasing phytoremediation efficiency and reliability using novel omics approaches

(2014) Terrence H. Bell et al.   TRENDS IN BIOTECHNOLOGY

Field trial on removal of petroleum-hydrocarbon pollutants using a microbial consortium for bioremediation and rhizoremediation

(2014) Paloma Pizarro-Tobías et al.   Environmental Microbiology Reports

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

(2013) Etienne Yergeau et al.   ISME Journal

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

Community-wide plasmid gene mobilization and selection

(2013) Vladimir Sentchilo et al.   ISME Journal

Rhizosphere Microbes as Essential Partners for Plant Stress Tolerance

(2013) Axel de Zelicourt et al.   Molecular Plant

Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013)

(2013) Yoav Bashan et al.   PLANT AND SOIL

Root Exudates from Grafted-Root Watermelon Showed a Certain Contribution in Inhibiting Fusarium oxysporum f. sp. niveum

(2013) Ning Ling et al.   PLoS One

The role of root exuded low molecular weight organic anions in facilitating petroleum hydrocarbon degradation: Current knowledge and future directions

(2013) Belinda C. Martin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Perspectives of plant-associated microbes in heavy metal phytoremediation

(2012) M. Rajkumar et al.   BIOTECHNOLOGY ADVANCES

Plant growth-promoting rhizobacteria (PGPR): their potential as antagonists and biocontrol agents

(2012) Anelise Beneduzi et al.   GENETICS AND MOLECULAR BIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

Identification of Nitrogen-Incorporating Bacteria in Petroleum-Contaminated Arctic Soils by Using [15N]DNA-Based Stable Isotope Probing and Pyrosequencing

(2011) Terrence H. Bell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil

(2011) Laetitia Bernard et al.   ISME Journal

Untapped potential: exploiting fungi in bioremediation of hazardous chemicals

(2011) Hauke Harms et al.   NATURE REVIEWS MICROBIOLOGY

Gradient Distribution of Root Exudates and Polycyclic Aromatic Hydrocarbons in Rhizosphere Soil

(2011) Yanzheng Gao et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Successes and limitations of phytotechnologies at field scale: outcomes, assessment and outlook from COST Action 859

(2010) Michel Mench et al.   JOURNAL OF SOILS AND SEDIMENTS

Rhizoremediation of hydrocarbon contaminated soil using Australian native grasses

(2010) Sharyn E. Gaskin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Accelerated biodegradation of pyrene and benzo[a]pyrene in the Phragmites australis rhizosphere by bacteria–root exudate interactions

(2010) Tadashi Toyama et al.   WATER RESEARCH

Auxin and Plant-Microbe Interactions

(2010) S. Spaepen et al.   Cold Spring Harbor Perspectives in Biology

Microarray and Real-Time PCR Analyses of the Responses of High-Arctic Soil Bacteria to Hydrocarbon Pollution and Bioremediation Treatments

(2009) E. Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Desorption of phenanthrene and pyrene in soils by root exudates

(2009) Yanzheng Gao et al.   BIORESOURCE TECHNOLOGY

The characterization of willow (Salix L.) varieties for use in ecological engineering applications: Co-ordination of structure, function and autecology

(2009) Yulia A. Kuzovkina et al.   ECOLOGICAL ENGINEERING

The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework

(2009) Eugene Rosenberg et al.   ENVIRONMENTAL MICROBIOLOGY

Dissipation of polycyclic aromatic hydrocarbons (PAHs) in the rhizosphere: Synthesis through meta-analysis

(2009) Bin Ma et al.   ENVIRONMENTAL POLLUTION

Bioaugmentation with Engineered Endophytic Bacteria Improves Contaminant Fate in Phytoremediation

(2009) Nele Weyens et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Three Year Field Test of a Plant Growth Promoting Rhizobacteria Enhanced Phytoremediation System at a Land Farm for Treatment of Hydrocarbon Waste

(2009) Jolanta Gurska et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A critical review of current methods in earthworm ecology: From individuals to populations

(2009) Mark D. Bartlett et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Roles of abiotic losses, microbes, plant roots, and root exudates on phytoremediation of PAHs in a barren soil

(2009) Tian-Ran Sun et al.   JOURNAL OF HAZARDOUS MATERIALS

Effect of the Earthworms Lumbricus terrestris and Aporrectodea caliginosa on Bacterial Diversity in Soil

(2009) Taras Y. Nechitaylo et al.   MICROBIAL ECOLOGY

Bioaugmentation as a strategy for cleaning up of soils contaminated with aromatic compounds

(2009) Agnieszka Mrozik et al.   MICROBIOLOGICAL RESEARCH

Microbial response to exudates in the rhizosphere of young beech trees (Fagus sylvatica L.) after dormancy

(2009) J. Esperschütz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Using earthworms to test the efficiency of remediation of oil-polluted soil in tropical Mexico

(2008) Violette Geissen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

AM fungi effects on the growth and physiology of Zea mays seedlings under diesel stress

(2008) M. Tang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE

Microbial consortium bioaugmentation of a polycyclic aromatic hydrocarbons contaminated soil

(2007) Rodrigo J.S. Jacques et al.   BIORESOURCE TECHNOLOGY

Degradation of phenanthrene and pyrene in rhizosphere of grasses and legumes

(2007) Sang-Hwan Lee et al.   JOURNAL OF HAZARDOUS MATERIALS