Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition

Soil microbial diversity and C turnover modified by tillage and cropping in Laos tropical grassland

(2013) Pascal Lienhard et al.   Environmental Chemistry Letters

Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks

(2013) Krista L. McGuire et al.   PLoS One

No-till and cover crops shift soil microbial abundance and diversity in Laos tropical grasslands

(2012) Pascal Lienhard et al.   Agronomy for Sustainable Development

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure

(2012) Pierre Plassart et al.   PLoS One

Validation of aClostridiumEndospore Viability Assay and Analysis of Greenland Ices and Atacama Desert Soils

(2011) Wan-Wan Yang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil microbial diversity: Methodological strategy, spatial overview and functional interest

(2011) Pierre-Alain Maron et al.   COMPTES RENDUS BIOLOGIES

The Effect of Soil Texture on Richness and Diversity of Bacterial Communities

(2011) Jessica Furrer Chau et al.   ENVIRONMENTAL FORENSICS

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management

(2011) S. Dequiedt et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Inter-laboratory evaluation of the ISO standard 11063 “Soil quality — Method to directly extract DNA from soil samples”

(2011) I. Petric et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Metagenomic comparison of direct and indirect soil DNA extraction approaches

(2011) Tom O. Delmont et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Validation and Application of a PCR Primer Set to Quantify Fungal Communities in the Soil Environment by Real-Time Quantitative PCR

(2011) Nicolas Chemidlin Prévost-Bouré et al.   PLoS One

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure

(2011) Sébastien Terrat et al.   Microbial Biotechnology

Effect of DNA Extraction Method on the Apparent Microbial Diversity of Soil

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accessing the Soil Metagenome for Studies of Microbial Diversity

(2010) Tom O. Delmont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pseudonocardia eucalypti sp. nov., an endophytic actinobacterium with a unique knobby spore surface, isolated from roots of a native Australian eucalyptus tree

(2010) O. Kaewkla et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Soil microbial diversity: an ISO standard for soil DNA extraction

(2010) Laurent Philippot et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil Microbial Communities Associated with Douglas-fir and Red Alder Stands at High- and Low-Productivity Forest Sites in Oregon, USA

(2010) Stephanie A. Yarwood et al.   MICROBIAL ECOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Considering fungal:bacterial dominance in soils – Methods, controls, and ecosystem implications

(2010) Michael S. Strickland et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

(2009) Lionel Ranjard et al.   Agronomy for Sustainable Development

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Strategies for accessing soil metagenome for desired applications

(2008) J. Rajendhran et al.   BIOTECHNOLOGY ADVANCES

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY