Graphlet signature-based scoring method to estimate protein-ligand binding affinity

Identification of Human Disease Genes from Interactome Network Using Graphlet Interaction

(2014) Xiao-Dong Wang et al.   PLoS One

Predicting protein-ligand and protein-peptide interfaces

(2014) Paola Bertolazzi et al.   European Physical Journal Plus

A combinatorial approach to graphlet counting

(2013) Tomaž Hočevar et al.   BIOINFORMATICS

Principles of Adaptive Sorting Revealed byIn SilicoEvolution

(2013) Jean-Benoît Lalanne et al.   PHYSICAL REVIEW LETTERS

Structure and Ligand Based Drug Design Strategies in the Development of Novel 5- LOX Inhibitors

(2012) Polamarasetty Aparoy et al.   CURRENT MEDICINAL CHEMISTRY

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

Computing graphlet signatures of network nodes and motifs in Cytoscape with GraphletCounter

(2011) C. Whelan et al.   BIOINFORMATICS

RING: networking interacting residues, evolutionary information and energetics in protein structures

(2011) A. J. M. Martin et al.   BIOINFORMATICS

Open Babel: An open chemical toolbox

(2011) Noel M O'Boyle et al.   Journal of Cheminformatics

The novel benzopyran class of selective cyclooxygenase-2 inhibitors. Part 2: The second clinical candidate having a shorter and favorable human half-life

(2010) Jane L. Wang et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Graphlet Kernels for Prediction of Functional Residues in Protein Structures

(2010) Vladimir Vacic et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Comparison of Several Molecular Docking Programs: Pose Prediction and Virtual Screening Accuracy

(2009) Jason B. Cross et al.   Journal of Chemical Information and Modeling

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

(2009) T. Milenkovic et al.   Journal of the Royal Society Interface