Captivity results in disparate loss of gut microbial diversity in closely related hosts

Are declines of an endangered mammal predation-driven, and can a captive-breeding and release program aid their recovery?

(2013) R. McCleery et al.   JOURNAL OF ZOOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity

(2013) Kevin D. Kohl et al.   Environmental Microbiology Reports

Conservation and the Microbiome

(2012) Kent H. Redford et al.   CONSERVATION BIOLOGY

Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores

(2012) Kevin D. Kohl et al.   ECOLOGY LETTERS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species differences in responses to captivity: stress, welfare and the comparative method

(2010) Georgia J. Mason   TRENDS IN ECOLOGY & EVOLUTION

Development of husbandry practices for the captive breeding of key largo woodrats (Neotoma floridana smalli)

(2010) Christina A. Alligood et al.   ZOO BIOLOGY

Revisiting the dietary niche: When is a mammalian herbivore a specialist?

(2009) L. A. Shipley et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

A Molecular Examination of Relatedness, Multiple Paternity, and Cohabitation of the Southern Plains Woodrat (Neotoma Micropus)

(2009) B. Dnate' Baxter et al.   JOURNAL OF MAMMALOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

What are the consequences of the disappearing human microbiota?

(2009) Martin J. Blaser et al.   NATURE REVIEWS MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE