Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria
出版年份 2014 全文链接
标题
Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria
作者
关键词
-
出版物
Frontiers in Genetics
Volume 5, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2014-07-02
DOI
10.3389/fgene.2014.00191
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Diversity of KaiC-based timing systems in marine Cyanobacteria
- (2014) Ilka M. Axmann et al. Marine Genomics
- A Data Integration and Visualization Resource for the Metabolic Network of Synechocystis sp. PCC 6803
- (2014) T. R. Maarleveld et al. PLANT PHYSIOLOGY
- Experimental evolution of protein–protein interaction networks
- (2013) Betül Kaçar et al. BIOCHEMICAL JOURNAL
- RNA-Seq analysis and targeted mutagenesis for improved free fatty acid production in an engineered cyanobacterium
- (2013) Anne M Ruffing Biotechnology for Biofuels
- Reconstruction of phyletic trees by global alignment of multiple metabolic networks
- (2013) Cheng-Yu Ma et al. BMC BIOINFORMATICS
- Protein–protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches
- (2013) Armand G. Ngounou Wetie et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
- (2013) Libusha Kelly et al. ISME Journal
- Genomic Taxonomy of the Genus Prochlorococcus
- (2013) Cristiane C. Thompson et al. MICROBIAL ECOLOGY
- The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
- (2013) Sandra Orchard et al. NUCLEIC ACIDS RESEARCH
- CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
- (2013) Takatomo Fujisawa et al. NUCLEIC ACIDS RESEARCH
- SHARP: genome-scale identification of gene–protein–reaction associations in cyanobacteria
- (2013) S. Krishnakumar et al. PHOTOSYNTHESIS RESEARCH
- Metabolic flux analysis of Cyanothece sp. ATCC 51142 under mixotrophic conditions
- (2013) Swathi Alagesan et al. PHOTOSYNTHESIS RESEARCH
- Ecogenomic Perspectives on Domains of Unknown Function: Correlation-Based Exploration of Marine Metagenomes
- (2013) Pier Luigi Buttigieg et al. PLoS One
- Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
- (2013) P. M. Shih et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
- (2013) P. Flombaum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803
- (2013) Henning Knoop et al. PLoS Computational Biology
- Proteomic responses of oceanic Synechococcus WH8102 to phosphate and zinc scarcity and cadmium additions
- (2013) Cox Frontiers in Microbiology
- Genetic Identification of a High-Affinity Ni Transporter and the Transcriptional Response to Ni Deprivation in Synechococcus sp. Strain WH8102
- (2012) C. L. Dupont et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Transcriptomic responses of Synechocystis sp. PCC 6803 encapsulated in silica gel
- (2012) David J. Dickson et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
- (2012) Brian J Haas et al. BMC GENOMICS
- iAK692: A genome-scale metabolic model of Spirulina platensis C1
- (2012) Amornpan Klanchui et al. BMC Systems Biology
- FAME, the Flux Analysis and Modeling Environment
- (2012) Joost Boele et al. BMC Systems Biology
- Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis
- (2012) Rex R Malmstrom et al. ISME Journal
- Comparison of Next-Generation Sequencing Systems
- (2012) Lin Liu et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- Ocean Science: The power of plankton
- (2012) Paul Falkowski NATURE
- ArrayExpress update—trends in database growth and links to data analysis tools
- (2012) Gabriella Rustici et al. NUCLEIC ACIDS RESEARCH
- STRING v9.1: protein-protein interaction networks, with increased coverage and integration
- (2012) Andrea Franceschini et al. NUCLEIC ACIDS RESEARCH
- Comparative Analysis of 126 Cyanobacterial Genomes Reveals Evidence of Functional Diversity Among Homologs of the Redox-Regulated CP12 Protein
- (2012) D. N. Stanley et al. PLANT PHYSIOLOGY
- CINPER: An Interactive Web System for Pathway Prediction for Prokaryotes
- (2012) Xizeng Mao et al. PLoS One
- Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
- (2012) J. Nogales et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proteomics: Bases for protein complexity understanding
- (2012) Domenico Rotilio et al. THROMBOSIS RESEARCH
- Iron Deprivation in Synechocystis : Inference of Pathways, Non-coding RNAs, and Regulatory Elements from Comprehensive Expression Profiling
- (2012) Miguel A. Hernández-Prieto et al. G3-Genes Genomes Genetics
- Synechococcus sp. Strain PCC 7002 Transcriptome: Acclimation to Temperature, Salinity, Oxidative Stress, and Mixotrophic Growth Conditions
- (2012) Marcus Ludwig et al. Frontiers in Microbiology
- Two-dimensional difference gel electrophoresis applied for analytical proteomics: fundamentals and applications to the study of plant proteomics
- (2011) Sandra Cristina Capaldi Arruda et al. ANALYST
- Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803
- (2011) Arnau Montagud et al. Biotechnology Journal
- Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources
- (2011) Sem Genini et al. BMC GENOMICS
- Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation
- (2011) Britt L Flaherty et al. BMC GENOMICS
- Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles
- (2011) Uma K Aryal et al. BMC Systems Biology
- Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability
- (2011) Anne W Thompson et al. ISME Journal
- A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142
- (2011) Jason E. McDermott et al. Molecular BioSystems
- Genomic island variability facilitates Prochlorococcus–virus coexistence
- (2011) Sarit Avrani et al. NATURE
- ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
- (2011) L. Kelly et al. NUCLEIC ACIDS RESEARCH
- MINT, the molecular interaction database: 2012 update
- (2011) Luana Licata et al. NUCLEIC ACIDS RESEARCH
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2011) R. Caspi et al. NUCLEIC ACIDS RESEARCH
- Light History Influences the Response of the Marine Cyanobacterium Synechococcus sp. WH7803 to Oxidative Stress
- (2011) N. Blot et al. PLANT PHYSIOLOGY
- Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142
- (2011) Jana Stöckel et al. PLoS One
- An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803
- (2011) Jan Mitschke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes
- (2011) Gustaf Sandh et al. PROTEOMICS
- Recent advances in understanding the assembly and repair of photosystem II
- (2010) Peter J. Nixon et al. ANNALS OF BOTANY
- Characterization of Cyanate Metabolism in MarineSynechococcusandProchlorococcusspp.
- (2010) Nina A. Kamennaya et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Photosystems and global effects of oxygenic photosynthesis
- (2010) Nathan Nelson BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Cytoscape Web: an interactive web-based network browser
- (2010) Christian T. Lopes et al. BIOINFORMATICS
- Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus
- (2010) Sandip Paul et al. BMC GENOMICS
- Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511
- (2010) Christian Kolowrat et al. BMC MICROBIOLOGY
- PtrA is required for coordinate regulation of gene expression during phosphate stress in a marine Synechococcus
- (2010) Martin Ostrowski et al. ISME Journal
- Rfam: Wikipedia, clans and the "decimal" release
- (2010) P. P. Gardner et al. NUCLEIC ACIDS RESEARCH
- The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth
- (2010) Henning Knoop et al. PLANT PHYSIOLOGY
- LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis
- (2010) R. Tanaka et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of Prochlorococcus clades from iron-depleted oceanic regions
- (2010) D. B. Rusch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Prochlorococcus: Advantages and Limits of Minimalism
- (2009) Frédéric Partensky et al. Annual Review of Marine Science
- Coastal Strains of Marine Synechococcus Species Exhibit Increased Tolerance to Copper Shock and a Distinctive Transcriptional Response Relative to Those of Open-Ocean Strains
- (2009) R. K. Stuart et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
- (2009) P. D. Karp et al. BRIEFINGS IN BIOINFORMATICS
- Occurrence of phosphate acquisition genes inProchlorococcuscells from different ocean regions
- (2009) Adam C. Martiny et al. ENVIRONMENTAL MICROBIOLOGY
- Current trends in high throughput proteomics in cyanobacteria
- (2009) Saw Yen Ow et al. FEBS LETTERS
- A strategy for meta-analysis of short time series microarray datasets
- (2009) Ruping Sun Frontiers in Bioscience-Landmark
- Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102
- (2009) Sasha G Tetu et al. ISME Journal
- Detection of an L-amino acid dehydrogenase activity in Synechocystis sp. PCC 6803
- (2009) S. Schriek et al. JOURNAL OF EXPERIMENTAL BOTANY
- OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis
- (2009) Lake-Ee Quek et al. Microbial Cell Factories
- Ecological Genomics of Marine Picocyanobacteria
- (2009) D. J. Scanlan et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
- (2009) Jens Georg et al. Molecular Systems Biology
- Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column
- (2009) Yanmei Shi et al. NATURE
- BioBIKE: A Web-based, programmable, integrated biological knowledge base
- (2009) Jeff Elhai et al. NUCLEIC ACIDS RESEARCH
- CyanoBase: the cyanobacteria genome database update 2010
- (2009) Mitsuteru Nakao et al. NUCLEIC ACIDS RESEARCH
- The Mechanism of Iron Homeostasis in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803 and Its Relationship to Oxidative Stress
- (2009) S. Shcolnick et al. PLANT PHYSIOLOGY
- Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes
- (2009) A. C. Martiny et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Abundances and Distributions of the Dominant nifH Phylotypes in the Northern Atlantic Ocean
- (2008) R. J. Langlois et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- InteroPORC: automated inference of highly conserved protein interaction networks
- (2008) Magali Michaut et al. BIOINFORMATICS
- SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803
- (2008) Woo-Yeon Kim et al. BMC BIOINFORMATICS
- CoastalSynechococcusmetagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
- (2008) B. Palenik et al. ENVIRONMENTAL MICROBIOLOGY
- Applications of cyanobacteria in biotechnology
- (2008) R.M.M. Abed et al. JOURNAL OF APPLIED MICROBIOLOGY
- Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growth
- (2008) J. Toepel et al. JOURNAL OF BACTERIOLOGY
- Consensus and Meta-analysis regulatory networks for combining multiple microarray gene expression datasets
- (2008) Emma Steele et al. JOURNAL OF BIOMEDICAL INFORMATICS
- Integration of Carbon and Nitrogen Metabolism with Energy Production Is Crucial to Light Acclimation in the Cyanobacterium Synechocystis
- (2008) A. K. Singh et al. PLANT PHYSIOLOGY
- Genome evolution in cyanobacteria: The stable core and the variable shell
- (2008) T. Shi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes
- (2008) J. Stockel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impacts of Atmospheric Anthropogenic Nitrogen on the Open Ocean
- (2008) R. A. Duce et al. SCIENCE
- Caveat emptor: limitations of the automated reconstruction of metabolic pathways in Plasmodium
- (2008) Hagai Ginsburg TRENDS IN PARASITOLOGY
- The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus
- (2008) Claudia Steglich et al. PLoS Genetics
- Unravelling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
- (2008) Alexis Dufresne et al. GENOME BIOLOGY
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