Detecting modules in biological networks by edge weight clustering and entropy significance

Kinase-two-hybrid: towards the conditional interactome

(2015) D. Ochoa et al.   Molecular Systems Biology

Phospho-tyrosine dependent protein-protein interaction network

(2015) A. Grossmann et al.   Molecular Systems Biology

Differential genetic interactions of yeast stress response MAPK pathways

(2015) H. Martin et al.   Molecular Systems Biology

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study

(2015) J. M. Villaveces et al.   Database-The Journal of Biological Databases and Curation

An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape

(2015) Hebing Chen et al.   Scientific Reports

KinomeXplorer: an integrated platform for kinome biology studies

(2014) Heiko Horn et al.   NATURE METHODS

The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells

(2014) Julia Petschnigg et al.   NATURE METHODS

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

(2014) Michael J Moore et al.   Nature Protocols

Enhancing the Functional Content of Eukaryotic Protein Interaction Networks

(2014) Gaurav Pandey et al.   PLoS One

Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks

(2013) B. Chen et al.   BRIEFINGS IN BIOINFORMATICS

Comprehensive molecular characterization of clear cell renal cell carcinoma

(2013)   NATURE

Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS

(2013) Markku Varjosalo et al.   NATURE METHODS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

A Census of Human Soluble Protein Complexes

(2012) Pierre C. Havugimana et al.   CELL

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

Network analysis: tackling complex data to study plant metabolism

(2012) David Toubiana et al.   TRENDS IN BIOTECHNOLOGY

Global cancer statistics

(2011) Ahmedin Jemal et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Algorithms for Detecting Significantly Mutated Pathways in Cancer

(2011) Fabio Vandin et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Consensus Pathways Implicated in Prognosis of Colorectal Cancer Identified Through Systematic Enrichment Analysis of Gene Expression Profiling Studies

(2011) Jesús Lascorz et al.   PLoS One

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence

(2011) B. Turner et al.   Database-The Journal of Biological Databases and Curation

Identifying differentially regulated subnetworks from phosphoproteomic data

(2010) Martin Klammer et al.   BMC BIOINFORMATICS

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Complex discovery from weighted PPI networks

(2009) Guimei Liu et al.   BIOINFORMATICS

A roadmap of clustering algorithms: finding a match for a biomedical application

(2009) B. Andreopoulos et al.   BRIEFINGS IN BIOINFORMATICS

Maps of random walks on complex networks reveal community structure

(2008) M. Rosvall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA