A straightforward and efficient analytical pipeline for metaproteome characterization
出版年份 2014 全文链接
标题
A straightforward and efficient analytical pipeline for metaproteome characterization
作者
关键词
Gut microbiota, Microbial community, Mouse, Metaproteomics, Protein extraction, Proteomic methods, Shotgun proteomics, Mass spectrometry, LC-MS/MS, Single-run liquid chromatography
出版物
Microbiome
Volume 2, Issue 1, Pages -
出版商
Springer Nature
发表日期
2014-12-09
DOI
10.1186/s40168-014-0049-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Urine Sample Preparation in 96-Well Filter Plates for Quantitative Clinical Proteomics
- (2014) Yanbao Yu et al. ANALYTICAL CHEMISTRY
- Metaproteomics Analysis Reveals the Adaptation Process for the Chicken Gut Microbiota
- (2013) Yue Tang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- High-fat diet alters gut microbiota physiology in mice
- (2013) Hannelore Daniel et al. ISME Journal
- A metaproteomic pipeline to identify newborn mouse gut phylotypes
- (2013) Federica Del Chierico et al. Journal of Proteomics
- Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems
- (2013) Carolin A. Kolmeder et al. Journal of Proteomics
- Rapid and Deep Human Proteome Analysis by Single-dimension Shotgun Proteomics
- (2013) Mohammad Pirmoradian et al. MOLECULAR & CELLULAR PROTEOMICS
- Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
- (2013) Christian Hoffmann et al. PLoS One
- Quantitatively Different, yet Qualitatively Alike: A Meta-Analysis of the Mouse Core Gut Microbiome with a View towards the Human Gut Microbiome
- (2013) Lukasz Krych et al. PLoS One
- Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture
- (2013) Alessandro Tanca et al. PLoS One
- Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of theEscherichia coliproteome
- (2013) Alessandro Tanca et al. PROTEOMICS
- Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome
- (2013) Nathan P. McNulty et al. PLOS BIOLOGY
- Method Development for Metaproteomic Analyses of Marine Biofilms
- (2012) Dagmar Hajkova Leary et al. ANALYTICAL CHEMISTRY
- The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
- (2012) Andreas Wilke et al. BMC BIOINFORMATICS
- Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities
- (2012) Robert L. Hettich et al. CURRENT OPINION IN MICROBIOLOGY
- Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
- (2012) Manuel Ferrer et al. ENVIRONMENTAL MICROBIOLOGY
- Gut microbiota disturbance during antibiotic therapy: a multi-omic approach
- (2012) Ana Elena Pérez-Cobas et al. GUT
- Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions
- (2012) Thomas Schneider et al. ISME Journal
- Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
- (2012) Martin Taubert et al. ISME Journal
- Metaproteome Analysis and Molecular Genetics of Rat Intestinal Microbiota Reveals Section and Localization Resolved Species Distribution and Enzymatic Functionalities
- (2012) Sven-Bastiaan Haange et al. JOURNAL OF PROTEOME RESEARCH
- Comparative Study of Workflows Optimized for In-gel, In-solution, and On-filter Proteolysis in the Analysis of Plasma Membrane Proteins
- (2012) Waeowalee Choksawangkarn et al. JOURNAL OF PROTEOME RESEARCH
- Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury
- (2012) Derrick E Fouts et al. Journal of Translational Medicine
- Structural basis for iron piracy by pathogenic Neisseria
- (2012) Nicholas Noinaj et al. NATURE
- Analysis of protein mixtures from whole-cell extracts by single-run nanoLC-MS/MS using ultralong gradients
- (2012) Thomas Köcher et al. Nature Protocols
- Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions
- (2012) Carolin A. Kolmeder et al. PLoS One
- The Colitis-Associated Transcriptional Profile of Commensal Bacteroides thetaiotaomicron Enhances Adaptive Immune Responses to a Bacterial Antigen
- (2012) Jonathan J. Hansen et al. PLoS One
- Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease
- (2012) Alison R. Erickson et al. PLoS One
- Soil metaproteomics – Comparative evaluation of protein extraction protocols
- (2012) Katharina M. Keiblinger et al. SOIL BIOLOGY & BIOCHEMISTRY
- Rapid DNA, RNA and protein extraction protocols optimized for slow continuously growing yeast cultures
- (2012) Kalesh Sasidharan et al. YEAST
- Microbial pathways in colonic sulfur metabolism and links with health and disease
- (2012) Franck Carbonero et al. Frontiers in Physiology
- TonB or not TonB: is that the question?This paper is one of a selection of papers published in a Special Issue entitled CSBMCB 53rd Annual Meeting — Membrane Proteins in Health and Disease, and has undergone the Journal’s usual peer review process.
- (2011) Karla D. Krewulak et al. Biochemistry and Cell Biology
- Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation
- (2011) Suman S. Thakur et al. MOLECULAR & CELLULAR PROTEOMICS
- System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap
- (2011) Nagarjuna Nagaraj et al. MOLECULAR & CELLULAR PROTEOMICS
- iPath2.0: interactive pathway explorer
- (2011) Takuji Yamada et al. NUCLEIC ACIDS RESEARCH
- Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments
- (2011) Brandi L. Cantarel et al. PLoS One
- TonB-Dependent Transporters: Regulation, Structure, and Function
- (2010) Nicholas Noinaj et al. Annual Review of Microbiology
- Comparison of protein precipitation methods for various rat brain structures prior to proteomic analysis
- (2010) Ewelina Fic et al. ELECTROPHORESIS
- Dissecting thein VivoMetabolic Potential of Two Human Gut Acetogens
- (2010) Federico E. Rey et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
- (2010) Anne Salonen et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics
- (2010) Karuna Chourey et al. JOURNAL OF PROTEOME RESEARCH
- Optimisation of protein extraction and 2-DE for metaproteomics of microbial communities from anaerobic wastewater treatment biofilms
- (2009) Florence Abram et al. ELECTROPHORESIS
- Improved detection of microbial DNA after bead-beating before DNA isolation
- (2009) Richard de Boer et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
- Functional analysis of natural microbial consortia using community proteomics
- (2009) Nathan C. VerBerkmoes et al. NATURE REVIEWS MICROBIOLOGY
- Environmental proteomics: Analysis of structure and function of microbial communities
- (2009) Thomas Schneider et al. PROTEOMICS
- Old Acetogens, New Light
- (2008) Harold L. Drake et al. Annals of the New York Academy of Sciences
- Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation
- (2008) Stephen W. Ragsdale et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Shotgun metaproteomics of the human distal gut microbiota
- (2008) Nathan C Verberkmoes et al. ISME Journal
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now