A Survey Sequence Comparison of Saccharum Genotypes Reveals Allelic Diversity Differences

Dispersion and domestication shaped the genome of bread wheat

(2013) Paul J. Berkman et al.   PLANT BIOTECHNOLOGY JOURNAL

Enrichment of genomic DNA for polymorphism detection in a non-model highly polyploid crop plant

(2012) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin

(2012) Changsoo Kim et al.   PLANT MOLECULAR BIOLOGY

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

(2012) Oliver Serang et al.   PLoS One

Limitations of the Human Reference Genome for Personalized Genomics

(2012) Jeffrey A. Rosenfeld et al.   PLoS One

Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata

(2012) Stephen H. Kazakoff et al.   PLoS One

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Organisation of the plant genome in chromosomes

(2011) J. S. Pat Heslop-Harrison et al.   PLANT JOURNAL

Chloroplast Genome Variation in Upland and Lowland Switchgrass

(2011) Hugh A. Young et al.   PLoS One

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes

(2010) Jianping Wang et al.   BMC GENOMICS

A New Approach for Copy Number Estimation in Polyploids

(2010) Andrew W. George et al.   JOURNAL OF HEREDITY

Molecular cytogenetic investigation of chromosome composition and transmission in sugarcane

(2010) George Piperidis et al.   MOLECULAR GENETICS AND GENOMICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Bayesian estimation of marker dosage in sugarcane and other autopolyploids

(2010) Peter Baker et al.   THEORETICAL AND APPLIED GENETICS

Polyploidy and angiosperm diversification

(2009) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

(2009) Stefan Kurtz et al.   BMC GENOMICS

Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat

(2009) Humphrey Wanjugi et al.   GENOME

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

(2008) Thomas Wicker et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH