DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA preservation: a test of commonly used preservatives for insects

(2013) Corrie S. Moreau et al.   INVERTEBRATE SYSTEMATICS

Correlates of gut community composition across an ant species (Cephalotes varians) elucidate causes and consequences of symbiotic variability

(2013) Yi Hu et al.   MOLECULAR ECOLOGY

Diversity and evolutionary patterns of bacterial gut associates of corbiculate bees

(2013) Hauke Koch et al.   MOLECULAR ECOLOGY

The bacterial communities in plant phloem-sap-feeding insects

(2013) Xiangfeng Jing et al.   MOLECULAR ECOLOGY

Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

(2013) Jon G. Sanders et al.   MOLECULAR ECOLOGY

A Cross-Taxon Analysis of Insect-Associated Bacterial Diversity

(2013) Ryan Thomas Jones et al.   PLoS One

Investigating the Impact of Storage Conditions on Microbial Community Composition in Soil Samples

(2013) Benjamin E. R. Rubin et al.   PLoS One

Evidence for a persistent microbial seed bank throughout the global ocean

(2013) S. M. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surveying the Microbiome of Ants: Comparing 454 Pyrosequencing with Traditional Methods To Uncover Bacterial Diversity

(2012) Stefanie Kautz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Establishment of Characteristic Gut Bacteria during Development of the Honeybee Worker

(2012) Vincent G. Martinson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

(2012) Frank O Aylward et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Ecological effects on gut bacterial communities in wild bumblebee colonies

(2012) Hauke Koch et al.   JOURNAL OF ANIMAL ECOLOGY

Do diet and taxonomy influence insect gut bacterial communities?

(2012) D. R. Colman et al.   MOLECULAR ECOLOGY

Genomic variation landscape of the human gut microbiome

(2012) Siegfried Schloissnig et al.   NATURE

Unlocking the potential of metagenomics through replicated experimental design

(2012) Rob Knight et al.   NATURE BIOTECHNOLOGY

Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples

(2012) Dana Willner et al.   PLoS One

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010.

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Negative Effects of Sample Pooling on PCR-Based Estimates of Soil Microbial Richness and Community Structure

(2010) D. K. Manter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

(2010) Christian L. Lauber et al.   FEMS MICROBIOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

(2010) Garret Suen et al.   PLoS Genetics

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

Bacterial gut symbionts are tightly linked with the evolution of herbivory in ants

(2009) Jacob A. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One