BioMiCo: a supervised Bayesian model for inference of microbial community structure

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Role of the Intestinal Microbiota in Resistance to Colonization by Clostridium difficile

(2014) Robert A. Britton et al.   GASTROENTEROLOGY

Gut Microbiota Signatures Predict Host and Microbiota Responses to Dietary Interventions in Obese Individuals

(2014) Katri Korpela et al.   PLoS One

BiomeNet: A Bayesian Model for Inference of Metabolic Divergence among Microbial Communities

(2014) Mahdi Shafiei et al.   PLoS Computational Biology

Long-Term Temporal Analysis of the Human Fecal Microbiota Revealed a Stable Core of Dominant Bacterial Species

(2013) Inés Martínez et al.   PLoS One

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis

(2013) Jacques Ravel et al.   Microbiome

Beyond the genome: community-level analysis of the microbial world

(2012) Iratxe Zarraonaindia et al.   BIOLOGY & PHILOSOPHY

Genomic variation landscape of the human gut microbiome

(2012) Siegfried Schloissnig et al.   NATURE

Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics

(2012) Ian Holmes et al.   PLoS One

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Differing Growth Responses of Major Phylogenetic Groups of Marine Bacteria to Natural Phytoplankton Blooms in the Western North Pacific Ocean

(2011) Yuya Tada et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre

(2011) Hannah Halm et al.   ISME Journal

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families

(2010) P. V. Patel et al.   GENOME RESEARCH

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vaginal microbial flora and outcome of pregnancy

(2009) Laura Donati et al.   ARCHIVES OF GYNECOLOGY AND OBSTETRICS

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY