标题
Chemostat culture systems support diverse bacteriophage communities from human feces
作者
关键词
Stool, Feces, Bacteriophage, Microbiome, Virome, Metagenome, Chemostat, Viral communities
出版物
Microbiome
Volume 3, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-11-06
DOI
10.1186/s40168-015-0124-3
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- (2015) Jason M. Norman et al. CELL
- Perinatal antibiotic-induced shifts in gut microbiota have differential effects on inflammatory lung diseases
- (2015) Shannon L. Russell et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Characterization of bacteriophage communities and CRISPR profiles from dental plaque
- (2014) Mayuri Naidu et al. BMC MICROBIOLOGY
- Human oral viruses are personal, persistent and gender-consistent
- (2014) Shira R Abeles et al. ISME Journal
- Comparison of planktonic and biofilm-associated communities of Clostridium difficile and indigenous gut microbiota in a triple-stage chemostat gut model
- (2014) G. S. Crowther et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Microbial composition analysis ofClostridium difficileinfections in an ulcerative colitis patient treated with multiple fecal microbiota transplantations
- (2014) Chantalle Brace et al. Journal of Crohns & Colitis
- Development and Validation of a Chemostat Gut Model To Study Both Planktonic and Biofilm Modes of Growth of Clostridium difficile and Human Microbiota
- (2014) Grace S. Crowther et al. PLoS One
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- DNA microarray analysis reveals that antibiotic resistance-gene diversity in human gut microbiota is age related
- (2014) Na Lu et al. Scientific Reports
- Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice
- (2014) Merete Ellekilde et al. Scientific Reports
- Association between living environment and human oral viral ecology
- (2013) Refugio Robles-Sikisaka et al. ISME Journal
- Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model
- (2013) Julie A.K. McDonald et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Differential Effects of Antibiotic Therapy on the Structure and Function of Human Gut Microbiota
- (2013) Ana Elena Pérez-Cobas et al. PLoS One
- Rapid evolution of the human gut virome
- (2013) S. Minot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Importance of prophages to evolution and virulence of bacterial pathogens
- (2013) Louis-Charles Fortier et al. Virulence
- An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome
- (2013) Anna Edlund et al. Microbiome
- Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut
- (2013) Elaine O Petrof et al. Microbiome
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform
- (2012) Andrew S. Whiteley et al. JOURNAL OF MICROBIOLOGICAL METHODS
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- Human Skin Microbiota: High Diversity of DNA Viruses Identified on the Human Skin by High Throughput Sequencing
- (2012) Vincent Foulongne et al. PLoS One
- Toward an Understanding of Changes in Diversity Associated with Fecal Microbiome Transplantation Based on 16S rRNA Gene Deep Sequencing
- (2012) D. Shahinas et al. mBio
- Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
- (2011) Kyoung-Ho Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
- (2011) David T Pride et al. ISME Journal
- An integrated semiconductor device enabling non-optical genome sequencing
- (2011) Jonathan M. Rothberg et al. NATURE
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- The impact of bacteriophages on probiotic bacteria and gut microbiota diversity
- (2010) Marco Ventura et al. Genes and Nutrition
- Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
- (2010) D. T. Pride et al. GENOME RESEARCH
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Bacteriophage resistance mechanisms
- (2010) Simon J. Labrie et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
- (2010) D. Willner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals
- (2009) Dana Willner et al. PLoS One
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Functional metagenomic profiling of nine biomes
- (2008) Elizabeth A. Dinsdale et al. NATURE
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
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