The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

Ontology-Based Querying with Bio2RDF’s Linked Open Data

(2013) Alison Callahan et al.   Journal of Biomedical Semantics

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics

(2012) R. Hoehndorf et al.   BIOINFORMATICS

Pharmacogenomics Knowledge for Personalized Medicine

(2012) M Whirl-Carrillo et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain

(2012) George P. Patrinos et al.   HUMAN MUTATION

Modeling biomedical experimental processes with OBI

(2012) Ryan R Brinkman et al.   Journal of Biomedical Semantics

Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics

(2011) Leonid L Chepelev et al.   BMC BIOINFORMATICS

Integrating systems biology models and biomedical ontologies

(2011) Robert Hoehndorf et al.   BMC Systems Biology

The value of data

(2011) Barend Mons et al.   NATURE GENETICS

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

(2011) Mark D Wilkinson et al.   Journal of Biomedical Semantics

Adding a Little Reality to Building Ontologies for Biology

(2010) Phillip Lord et al.   PLoS One

Alignment of the UMLS semantic network with BioTop: methodology and assessment

(2009) S. Schulz et al.   BIOINFORMATICS

Novel Protein-Protein Interactions Inferred from Literature Context

(2009) Herman H. H. B. M. van Haagen et al.   PLoS One

An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence

(2008) Satya S. Sahoo et al.   JOURNAL OF BIOMEDICAL INFORMATICS

State of the nation in data integration for bioinformatics

(2008) Carole Goble et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

(2008) François Belleau et al.   JOURNAL OF BIOMEDICAL INFORMATICS