Sequencing and De Novo Transcriptome Assembly of Brachypodium sylvaticum (Poaceae)

Strategies for transcriptome analysis in nonmodel plants

(2012) Judson A. Ward et al.   AMERICAN JOURNAL OF BOTANY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Short Communication Discovery of a large set of SNP and SSR genetic markers by high-throughput sequencing of pepper (Capsicum annuum)

(2012) M. Nicolaï et al.   GENETICS AND MOLECULAR RESEARCH

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

The First Illumina-Based De Novo Transcriptome Sequencing and Analysis of Safflower Flowers

(2012) Huang Lulin et al.   PLoS One

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Exploiting the Brachypodium Tool Box in cereal and grass research

(2011) Luis A. J. Mur et al.   NEW PHYTOLOGIST

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

Compact genomes and complex evolution in the genus Brachypodium

(2010) Elzbieta Wolny et al.   CHROMOSOMA

Context-dependent pattern and process: the distribution and competitive dynamics of an invasive grass, Brachypodium sylvaticum

(2009) Susan E. Holmes et al.   BIOLOGICAL INVASIONS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Selectively eliminating and conserving exotic plants to save an endangered butterfly from local extinction

(2008) P. M. Severns et al.   ANIMAL CONSERVATION

Why forests appear resistant to exotic plant invasions: intentional introductions, stand dynamics, and the role of shade tolerance

(2008) Patrick H Martin et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Evidence for multiple sources of invasion and intraspecific hybridization inBrachypodium sylvaticum(Hudson) Beauv. in North America

(2008) DAVID M. ROSENTHAL et al.   MOLECULAR ECOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH