4.2 Article

Nuclear size, nuclear pore number and cell cycle

期刊

NUCLEUS
卷 2, 期 2, 页码 113-118

出版社

TAYLOR & FRANCIS INC
DOI: 10.4161/nucl.2.2.15446

关键词

nuclear size; nuclear pore complex (NPC); cyclin-dependent protein kinases (Cdks); bio-imaging; cell-fusion

向作者/读者索取更多资源

In eukaryotic cells, the nucleus is a complex and sophisticated organelle containing genomic DNA and supports essential cellular activities. Its surface contains many nuclear pore complexes (NPCs), channels for macromolecular transport between the cytoplasm and nucleus. It has been observed that the nuclear volume and the number of NPCs almost doubles during interphase in dividing cells, but the coordination of these events with the cell cycle was poorly understood, particularly in mammalian cells. Recently, we demonstrated that cyclin-dependent protein kinases (Cdks) control interphase NPC formation in dividing human cells. Cdks drive the very early step of NPC formation because Cdk inhibition suppressed the generation of nascent pores, which are considered to be immature NPCs, and disturbed expression and localization of some nucleoporins. Cdk inhibition did not affect nuclear volume, suggesting that these two processes have distinct regulatory mechanisms in the cell cycle. The details of our experimental systems and finding are discussed in more depth. With new findings recently reported, we also discuss possible molecular mechanisms of interphase NPC formation.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.2
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Cell Biology

Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell

Kazuhiro Maeshima, Sachiko Tamura, Jeffrey C. Hansen, Yuji Itoh

CURRENT OPINION IN CELL BIOLOGY (2020)

Article Cell Biology

The intrinsically disordered N-terminal region of mouse DNA polymerase alpha mediates its interaction with POT1a/b at telomeres

Takeshi Mizuno, Kei Hirabayashi, Sae Miyazawa, Yurika Kobayashi, Kenta Shoji, Masakazu Kobayashi, Fumio Hanaoka, Naoko Imamoto, Hidetaka Torigoe

Summary: The study investigated the interaction between DNA polymerase alpha and two paralogs of mouse POT1 telomere-binding protein, revealing their roles in lagging strand synthesis. Experimental results showed that the POT1a/b-TPP1-TIN2 complex accumulated in the nucleus, interacted with DNA polymerase alpha, and participated in telomere synthesis.

GENES TO CELLS (2021)

Article Biology

1,6-hexanediol rapidly immobilizes and condenses chromatin in living human cells

Yuji Itoh, Shiori Iida, Sachiko Tamura, Ryosuke Nagashima, Kentaro Shiraki, Tatsuhiko Goto, Kayo Hibino, Satoru Ide, Kazuhiro Maeshima

Summary: 1,6-hexanediol inhibits liquid droplet formation within cells and leads to hyper-condensation of chromatin, with effects that are dose-dependent. This compound also facilitates cation-dependent chromatin condensation in vitro, distinct from its activity on liquid droplets.

LIFE SCIENCE ALLIANCE (2021)

Article Cell Biology

Physical Nature of Chromatin in the Nucleus

Kazuhiro Maeshima, Shiori Iida, Sachiko Tamura

Summary: Genomic information is encoded on long strands of DNA, stored in nuclear chromatin. The structure of chromatin is highly influenced by the surrounding environment, forming compact and dynamic domains that affect DNA accessibility and function. New technologies and evidence have shifted our understanding of chromatin from being regular and static to more variable and dynamic.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2021)

Article Multidisciplinary Sciences

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

Claire Hoencamp, Olga Dudchenko, Ahmed M. O. Elbatsh, Sumitabha Brahmachari, Jonne A. Raaijmakers, Tom van Schaik, Angela Sedeno Cacciatore, Vinicius G. Contessoto, Roy G. H. P. van Heesbeen, Bram van den Broek, Aditya N. Mhaskar, Hans Teunissen, Brian Glenn St Hilaire, David Weisz, Arina D. Omer, Melanie Pham, Zane Colaric, Zhenzhen Yang, Suhas S. P. Rao, Namita Mitra, Christopher Lui, Weijie Yao, Ruqayya Khan, Leonid L. Moroz, Andrea Kohn, Judy St Leger, Alexandria Mena, Karen Holcroft, Maria Cristina Gambetta, Fabian Lim, Emma Farley, Nils Stein, Alexander Haddad, Daniel Chauss, Ayse Sena Mutlu, Meng C. Wang, Neil D. Young, Evin Hildebrandt, Hans H. Cheng, Christopher J. Knight, Theresa L. U. Burnham, Kevin A. Hovel, Andrew J. Beel, Pierre-Jean Mattei, Roger D. Kornberg, Wesley C. Warren, Gregory Cary, Jose Luis Gomez-Skarmeta, Veronica Hinman, Kerstin Lindblad-Toh, Federica Di Palma, Kazuhiro Maeshima, Asha S. Multani, Sen Pathak, Liesl Nel-Themaat, Richard R. Behringer, Parwinder Kaur, Rene H. Medema, Bas van Steensel, Elzo de Wit, Jose N. Onuchic, Michele Di Pierro, Erez Lieberman Aiden, Benjamin D. Rowland

Summary: The study identified two types of three-dimensional genome architectures at the chromosome scale in eukaryotes, with one type correlated with the absence of condensin II subunits. Depletion of condensin II in humans results in a genome structure resembling that of fungi or mosquitoes. The research proposes a physical model in which condensin II compacts chromosomes lengthwise during mitosis, influencing the chromosome-scale genome architecture.

SCIENCE (2021)

Article Cell Biology

ZC3HC1 Is a Novel Inherent Component of the Nuclear Basket, Resident in a State of Reciprocal Dependence with TPR

Philip Gunkel, Haruki Iino, Sandra Krull, Volker C. Cordes

Summary: The nuclear basket (NB) scaffold is a fibrillar structure composed of coiled-coil dominated protein TPR, to which other proteins can bind without affecting structural integrity. The discovery of vertebrate protein ZC3HC1 as a new component of the NB expands its functional repertoire, affecting different types of cell nuclear envelopes (NE). This suggests a more complex NB structure than previously thought.
Article Biochemistry & Molecular Biology

Liquid-like chromatin in the cell: What can we learn from imaging and computational modeling?

Yuji Itoh, Esmae J. Woods, Katsuhiko Minami, Kazuhiro Maeshima, Rosana Collepardo-Guevara

Summary: Chromatin in eukaryotic cells is a complex structure comprised of DNA, histones, and associated proteins, exhibiting dynamic liquid-like behavior and undergoing structural variations within the cell. Advanced imaging techniques have allowed for the observation of these characteristics, while computational modeling has provided insight into the molecular mechanisms behind this behavior, highlighting the importance of chromatin dynamics in living cells.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2021)

Article Genetics & Heredity

Telomere-specific chromatin capture using a pyrrole-imidazole polyamide probe for the identification of proteins and non-coding RNAs

Satoru Ide, Asuka Sasaki, Yusuke Kawamoto, Toshikazu Bando, Hiroshi Sugiyama, Kazuhiro Maeshima

Summary: The new PI-PRICh method allows effective isolation of specific chromatin segments and identification of both protein and RNA components. This approach shows good reproducibility in identifying telomeric chromatin, providing a promising alternative for studying chromatin organization and functions within the cell.

EPIGENETICS & CHROMATIN (2021)

Article Biology

Lack of Hikeshi activates HSF1 activity under normal conditions and disturbs the heat-shock response

Shingo Kose, Kenichiro Imai, Ai Watanabe, Akira Nakai, Yutaka Suzuki, Naoko Imamoto

Summary: Hikeshi mediates the nuclear import of HSP70 and regulates its nucleocytoplasmic distribution and functions. Nuclear HSP70 affects the transcriptional activity of HSF1 and nuclear proteostasis. Depletion of Hikeshi leads to reduced nuclear HSP70 levels and up-regulation of HSF1-regulated gene expression.

LIFE SCIENCE ALLIANCE (2022)

Article Biochemistry & Molecular Biology

Chromatin behavior in living cells: Lessons from single-nucleosome imaging and tracking

Satoru Ide, Sachiko Tamura, Kazuhiro Maeshima

Summary: The chromatin, consisting of nucleosomes and associated proteins and RNAs, plays a critical role in regulating genome functions. Single-nucleosome imaging is an effective method to investigate the behavior of chromatin in living cells, providing insights into its organization and dynamics not observed in fixed cells. Analyzing the motion data from various aspects can contribute to a better understanding of genome functions.

BIOESSAYS (2022)

Editorial Material Multidisciplinary Sciences

A phase transition for chromosome transmission

Kazuhiro Maeshima

NATURE (2022)

Article Multidisciplinary Sciences

Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells

Shiori Iida, Soya Shinkai, Yuji Itoh, Sachiko Tamura, Masato T. Kanemaki, Shuichi Onami, Kazuhiro Maeshima

Summary: The study revealed that local chromatin motion remains steady in live human cells throughout the phases of G1, S, and G2, driven mainly by thermal fluctuations, with an increase in motion following a DNA damage response. These findings support the viscoelastic properties of chromatin and suggest that steady-state chromatin motion enables cells to perform housekeeping functions during interphase.

SCIENCE ADVANCES (2022)

Editorial Material Cell Biology

Editorial: Emerging concepts and tools in genome organization and chromatin function in eukaryotes

Kazuhiro Maeshima, Eran Meshorer

CURRENT OPINION IN CELL BIOLOGY (2022)

Article Cell Biology

An evolutionarily conserved bimodular domain anchors ZC3HC1 and its yeast homologue Pml39p to the nuclear basket

Philip Gunkel, Haruki Iino, Sandra Krull, Volker C. Cordes

Summary: Proteins ZC3HC1 and TPR are key components of the nuclear basket, which is attached to the nucleoplasmic side of the nuclear pore complex. ZC3HC1 initially binds to the nuclear basket in a TPR-dependent manner and can recruit additional TPR polypeptides to this structure.

MOLECULAR BIOLOGY OF THE CELL (2023)

Article Multidisciplinary Sciences

Condensed but liquid-like domain organization of active chromatin regions in living human cells

Tadasu Nozaki, Soya Shinkai, Satoru Ide, Koichi Higashi, Sachiko Tamura, Masa A. Shimazoe, Masaki Nakagawa, Yutaka Suzuki, Yasushi Okada, Masaki Sasai, Shuichi Onami, Ken Kurokawa, Shiori Iida, Kazuhiro Maeshima

Summary: In eukaryotes, the physical nature of higher-order chromatin organization in living cells, such as whether it is condensed or extended and whether it is liquid-like or solid-like, remains unclear. In this study, novel approaches combining genomics, single-nucleosome imaging, and computational modeling were used to investigate the physical organization and behavior of early DNA replicated regions in human cells. The results showed that nucleosomes form physically condensed domains with approximately 150-nm diameters, even in active chromatin regions. The behavior of nucleosomes within these domains is liquid-like on the scale of 150 nm/0.5 s, facilitating chromatin accessibility, while at larger scales, chromatin behaves more like a solid, potentially contributing to genome integrity.

SCIENCE ADVANCES (2023)

暂无数据